source: orange-bioinformatics/docs/rst/index.rst @ 1674:1feec0bd5ffb

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Documentation changes. Version bump.

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[1667]1Orange Bioinformatics documentation
[1665]2===================================
[1294]3
[1662]4Orange Bioinformatics is an add-on for Orange_ data mining software package. It
5extends Orange by providing common functionality for basic tasks in
6bioinformatics. It also provides widgets for Orange Canvas, which enable users
7who are not programmers to manage microarray and genomic data flow and to
8customize their analysis by combining common data analysis tools to fit their
9needs.
[1294]10
[1662]11.. _Orange: http://orange.biolab.si/
12
[1668]13Widgets
14-------
[1294]15
16.. toctree::
17   :maxdepth: 1
18 
19   PIPA.rst
20
[1668]21Scripting Reference
22-------------------
[1665]23   
24.. toctree::
25   :maxdepth: 1
[1674]26
27Installation
28------------
29
30To install Bioinformatics add-on for Orange from PyPi_ run::
31
32    pip install Orange-Bioinformatics
33
34To install it from source code run::
35
36    python setup.py install
37
38To build Python egg run::
39
40    python setup.py bdist_egg
41
42To install add-on in `development mode`_ run::
43
44    python setup.py develop
45
46.. _development mode: http://packages.python.org/distribute/setuptools.html#development-mode
47.. _PyPi: http://pypi.python.org/pypi
48
[1662]49Source Code and Issue Tracker
50-----------------------------
51
52Source code is available on Bitbucket_. For issues and wiki we use Trac_.
53
54.. _Bitbucket: https://bitbucket.org/biolab/orange-bioinformatics
55.. _Trac: http://orange.biolab.si/trac/
56
[1294]57Indices and tables
58==================
59
60* :ref:`genindex`
[1668]61* :ref:`modindex`
[1294]62* :ref:`search`
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