source: orange-bioinformatics/docs/rst/index.rst @ 1742:fa3a9e4af7e6

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[1667]1Orange Bioinformatics documentation
[1665]2===================================
[1294]3
[1662]4Orange Bioinformatics is an add-on for Orange_ data mining software package. It
5extends Orange by providing common functionality for basic tasks in
6bioinformatics. It also provides widgets for Orange Canvas, which enable users
7who are not programmers to manage microarray and genomic data flow and to
8customize their analysis by combining common data analysis tools to fit their
9needs.
[1294]10
[1662]11.. _Orange: http://orange.biolab.si/
12
[1668]13Widgets
14-------
[1294]15
16.. toctree::
17   :maxdepth: 1
18 
19   PIPA.rst
20
[1668]21Scripting Reference
22-------------------
[1665]23   
24.. toctree::
25   :maxdepth: 1
[1674]26
[1736]27   reference/kegg.rst
[1742]28   reference/ontology.rst
[1736]29
[1674]30Installation
31------------
32
33To install Bioinformatics add-on for Orange from PyPi_ run::
34
35    pip install Orange-Bioinformatics
36
37To install it from source code run::
38
39    python setup.py install
40
41To build Python egg run::
42
43    python setup.py bdist_egg
44
45To install add-on in `development mode`_ run::
46
47    python setup.py develop
48
49.. _development mode: http://packages.python.org/distribute/setuptools.html#development-mode
50.. _PyPi: http://pypi.python.org/pypi
51
[1662]52Source Code and Issue Tracker
53-----------------------------
54
55Source code is available on Bitbucket_. For issues and wiki we use Trac_.
56
57.. _Bitbucket: https://bitbucket.org/biolab/orange-bioinformatics
58.. _Trac: http://orange.biolab.si/trac/
59
[1294]60Indices and tables
61==================
62
63* :ref:`genindex`
[1668]64* :ref:`modindex`
[1294]65* :ref:`search`
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