source: orange-bioinformatics/docs/rst/index.rst @ 1790:b02dd1e12b3f

Revision 1790:b02dd1e12b3f, 1.5 KB checked in by markotoplak, 11 months ago (diff)

Added obiDictyMutants to the documentation index.

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1Orange Bioinformatics documentation
2===================================
3
4Orange Bioinformatics is an add-on for Orange_ data mining software package. It
5extends Orange by providing common functionality for basic tasks in
6bioinformatics. It also provides widgets for Orange Canvas, which enable users
7who are not programmers to manage microarray and genomic data flow and to
8customize their analysis by combining common data analysis tools to fit their
9needs.
10
11.. _Orange: http://orange.biolab.si/
12
13Widgets
14-------
15
16.. toctree::
17   :maxdepth: 1
18 
19   PIPA.rst
20
21Scripting Reference
22-------------------
23   
24.. toctree::
25   :maxdepth: 1
26
27   reference/kegg.rst
28   reference/ontology.rst
29   reference/dictybase.rst
30
31Installation
32------------
33
34To install Bioinformatics add-on for Orange from PyPi_ run::
35
36    pip install Orange-Bioinformatics
37
38To install it from source code run::
39
40    python setup.py install
41
42To build Python egg run::
43
44    python setup.py bdist_egg
45
46To install add-on in `development mode`_ run::
47
48    python setup.py develop
49
50.. _development mode: http://packages.python.org/distribute/setuptools.html#development-mode
51.. _PyPi: http://pypi.python.org/pypi
52
53Source Code and Issue Tracker
54-----------------------------
55
56Source code is available on Bitbucket_. For issues and wiki we use Trac_.
57
58.. _Bitbucket: https://bitbucket.org/biolab/orange-bioinformatics
59.. _Trac: http://orange.biolab.si/trac/
60
61Indices and tables
62==================
63
64* :ref:`genindex`
65* :ref:`modindex`
66* :ref:`search`
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