source: orange/orange/doc/networks/network_info.tab @ 7413:06dd273e3f39

Revision 7413:06dd273e3f39, 2.7 KB checked in by jzbontar <jure.zbontar@…>, 3 years ago (diff)

added Orange.evaluation.testing

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1Network Name    Network File    dir Item Set    Edge Set    Vertices    Edges   Date    Description
2string  string  string  string  string  continuous  continuous  string  string
3                               
4Air traffic network airtraffic.net  doc/datasets/   airtraffic_items.tab    ""  749 7688    4/12/2010   Nodes represent airports. Two nodes are connected if a direct flight between them exists.
5Leukemia genes connected by PubMed co-reference leu_by_pmid.net doc/datasets/   leu_by_pmid_items.tab   ""  253 1360    4/12/2010   The gene similarities are calculated based on common reference in articles form the PubMed using the Jaccard index. Two genes are similar if they are referenced together in several PubMed articles. The similarity threshold was set to 0.5.
6Similar music artists   last.fm.net doc/datasets/   last.fm_items.tab   ""  1239    7926    4/12/2010   Nodes represent music artists. Two artists are connected if they are in the top 5 similar artist list on the last.fm internet radio.
7PPI network mips_c2_cp_leu.net  doc/datasets/   mips_c2_cp_leu_items.tab    ""  132 242 4/12/2010   Protein-protein interaction network: theleukemia genes were connected into the network based on their protein interactions from the MIPS mammalian protein-protein interaction database. In addition, we used the biological function similarity score for placing the interacting protein components based on the similar biological functions of the proteins comprising them.
8Leukemia genes connected by Huttenhower score   leu_huttenhower_a.net   doc/datasets/   leu_huttenhower_a_items.tab ""  240 446 4/12/2010   The similarity between genes as computed by Huttenhower et al., 2009 using the information on all publicly available gene expression and protein interaction data, combined with prior knowledge from the Gene Ontology, KEGG, HPRD and other biological data bases. The threshold for similarity was set to 0.999.
9D. discoideum gene publication network  dicty_publication.net   doc/datasets/   dicty_publication_items.tab dicty_publication_edges.tab 385 6394    4/12/2010   Network from Dictyostelium discoideum gene and publication data. It contains nodes of two types: genes and MeSH terms. Edges connect: genes that were cited in similar publications, MeSH terms that were used to annotate the same publications, and genes to MeSH terms which were used to annotate publications citing the genes.
10Leukemia genes connected by biological function leu_by_genesets.net doc/datasets/   leu_by_genesets_items.tab   ""  72  146 4/12/2010   The similarity of the genes relates to their biological functions and was calculated based on their membership in canonical biological pathways using the Jaccard index. The information on the membership of genes in biological pathways was acquired from the Molecular Signature Database
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