Changeset 1716:4c4266f7c5a5 in orange-bioinformatics for _bioinformatics/obiGeneSets.py


Ignore:
Timestamp:
08/30/12 16:05:10 (20 months ago)
Author:
markotoplak
Branch:
default
Message:

Removed the old version of obiKEGG. Renamed obiKEGG2 -> obiKEGG.

File:
1 edited

Legend:

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  • _bioinformatics/obiGeneSets.py

    r1713 r1716  
    4545    Returns gene sets from KEGG pathways. 
    4646    """ 
    47     from . import obiKEGG2 as obiKEGG 
    4847     
    4948    kegg = obiKEGG.KEGGOrganism(org) 
     
    7877    Return gene sets from miRNA targets 
    7978    """ 
    80     from . import obimiRNA, obiKEGG2 
    81     org_code = obiKEGG2.from_taxid(org) 
     79    from . import obimiRNA 
     80    org_code = obiKEGG.from_taxid(org) 
    8281    link_fmt = "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=%s" 
    8382    mirnas = [(id, obimiRNA.get_info(id)) for id in obimiRNA.ids(org_code)] 
     
    350349    """ 
    351350    orngServerFiles.update_local_files() 
    352  
    353     from . import obiKEGG2 as obiKEGG 
    354351 
    355352    genesetsfn = [ keggGeneSets, goGeneSets, miRNAGeneSets] 
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