Changeset 1716:4c4266f7c5a5 in orange-bioinformatics for _bioinformatics/obiGenomicsUpdate.py


Ignore:
Timestamp:
08/30/12 16:05:10 (20 months ago)
Author:
markotoplak
Branch:
default
Message:

Removed the old version of obiKEGG. Renamed obiKEGG2 -> obiKEGG.

File:
1 edited

Legend:

Unmodified
Added
Removed
  • _bioinformatics/obiGenomicsUpdate.py

    r1636 r1716  
    198198        pkgUpdate.UpdateAnnotation(org) 
    199199 
    200     pkgUpdate = obiGenomicsUpdate.PKGUpdate("kegg", obiKEGG.Update()) 
    201  
    202     print "Updating KEGG taxonomy" 
    203     pkgUpdate.UpdateTaxonomy() 
    204  
    205     print "Updating KEGG orthology" 
    206     pkgUpdate.UpdateOrthology() 
    207  
    208     print "Updating KEGG reference pathways" 
    209     pkgUpdate.UpdateReference() 
    210  
    211     for org, name in [("hsa", "Homo sapiens"), ("sce", "Yeast")]: 
    212         print "Updating KEGG pathways for", name 
    213         pkgUpdate.UpdateOrganism(org) 
    214      
    215  
    216200def firstUpdateQt(): 
    217201    pass 
Note: See TracChangeset for help on using the changeset viewer.