Changeset 1794:3a530b619d7f in orange-bioinformatics for _bioinformatics/obiGeneSets.py


Ignore:
Timestamp:
05/20/13 09:17:21 (11 months ago)
Author:
Flashpoint <vid.flashpoint@…>
Branch:
default
Message:

Added Cytobands genesets and modified obiOMIM.py. Both need some extra work.

File:
1 edited

Legend:

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  • _bioinformatics/obiGeneSets.py

    r1782 r1794  
    7575                        for phenotype, mutants in obiDictyMutants.phenotype_mutants().items()] 
    7676 
     77    return GeneSets(genesets) 
     78 
     79def cytobandGeneSets(): 
     80    """ 
     81    Return cytoband gene sets from Stanford Microarray Database 
     82    """ 
     83    from . import obiCytobands 
     84     
     85    genesets = [GeneSet(id=band.name, name=band.descriptor, genes=obiCytobands.band_genes(band), hierarchy=("Cytobands",), organism="9606", # 352472 gathered from obiGO.py code_map -> Dicty identifier 
     86                        link="") \ 
     87                        for band in obiCytobands.bands()] 
     88   
    7789    return GeneSets(genesets) 
    7890 
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