Changeset 1795:663192bd4469 in orange-bioinformatics for _bioinformatics/obiOMIM.py


Ignore:
Timestamp:
05/20/13 10:24:50 (11 months ago)
Author:
Flashpoint <vid.flashpoint@…>
Branch:
default
Message:

Removed obiCytobands.py and created genesets in obiGeneSets.py. updateCytobands.py saves only genesets now

File:
1 edited

Legend:

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  • _bioinformatics/obiOMIM.py

    r1794 r1795  
    1616        string = morbidmap_line.split("|", 1)[0] 
    1717        match = self.regex.match(string) 
    18 #        print string 
    19 #        print match.groups() 
     18        print string 
     19        print match.groups() 
    2020        self.name, self.id, self.mapping = [s.strip() if s else s for s in match.groups()[:3]] 
    2121        if match.group("m2"): 
     
    3232             
    3333        filename = os.path.join(self.local_database_path, "morbidmap") 
     34        print filename 
    3435        if not os.path.exists(filename): 
    3536            stream = urllib2.urlopen("ftp://ftp.ncbi.nih.gov/repository/OMIM/ARCHIVE/morbidmap") 
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