Changeset 1413:8047e2f7fee4 in orange-bioinformatics


Ignore:
Timestamp:
06/13/11 10:15:30 (3 years ago)
Author:
markotoplak
Branch:
default
Convert:
e4d9f74b61d75913f7fd49c83ca7b1696cbfb04c
Message:

obiAssess test script uses obiGeneSets.collections() in the right way.

File:
1 edited

Legend:

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  • obiAssess.py

    r1108 r1413  
    683683    #gsets = obiGeneSets.collections("C2.CP.gmt", "C5.MF.gmt", "C5.BP.gmt") 
    684684 
    685     #ass = AssessLearner()(data, matcher, obiGeneSets.collections(["steroltalk.gmt"], default=False), rankingf=AT_loessLearner()) 
    686     #ass = MeanLearner()(data, matcher, obiGeneSets.collections(["steroltalk.gmt"], default=False)) 
    687     #ass = PLSLearner()(data, matcher, obiGeneSets.collections(["steroltalk.gmt"], default=False), classValues=choosen_cv) 
    688     #ass = SetSigOLDLearner()(ldata, matcher, obiGeneSets.collections(["steroltalk.gmt"], default=False), classValues=choosen_cv, minPart=0.0) 
     685    #ass = AssessLearner()(data, matcher, gsets, rankingf=AT_loessLearner()) 
     686    #ass = MeanLearner()(data, matcher, gsets, default=False)) 
     687    ass = PLSLearner()(data, matcher, gsets, classValues=choosen_cv) 
     688    #ass = SetSigOLDLearner()(ldata, matcher, gsets, classValues=choosen_cv, minPart=0.0) 
    689689    #ass = SetSigLearner()(ldata, matcher, gsets, classValues=choosen_cv, minPart=0.0) 
    690690    #ass = PCALearner()(ldata, matcher, gsets, classValues=choosen_cv, minPart=0.0) 
    691     ass = GSALearner()(ldata, matcher, gsets, classValues=choosen_cv, minPart=0.0) 
     691    #ass = GSALearner()(ldata, matcher, gsets, classValues=choosen_cv, minPart=0.0) 
    692692 
    693693    ar = defaultdict(list) 
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