Changeset 1778:a94aec22f398 in orange-bioinformatics for _bioinformatics/obiGeneSets.py


Ignore:
Timestamp:
05/07/13 09:58:15 (12 months ago)
Author:
Flashpoint <vid.flashpoint@…>
Branch:
default
Message:

Added pickling to obiDictyMutants.py, changed the URL in obiGeneSets.py's omimGeneSets()

File:
1 edited

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  • _bioinformatics/obiGeneSets.py

    r1761 r1778  
    7575    Return gene sets from OMIM (Online Mendelian Inheritance in Man) diseses 
    7676    """ 
    77     from . import obiOMIM    # The link here leads to a redirection... should replace it with the new URL 
     77    from . import obiOMIM     
    7878    genesets = [GeneSet(id=disease.id, name=disease.name, genes=obiOMIM.disease_genes(disease), hierarchy=("OMIM",), organism="9606", 
    79                     link=("http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=" % disease.id if disease.id else None)) \ 
     79                    link=("http://www.omim.org/entry/%s" % disease.id if disease.id else None)) \ 
    8080                    for disease in obiOMIM.diseases()] 
    8181    return GeneSets(genesets) 
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