source: orange-bioinformatics @ 1441:bc0297a9952a

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Diff Rev Age Author Log Message
(edit) @1441:bc0297a9952a   2 years www-data Automated manifest update.
(edit) @1440:dd095aafafb8   2 years ales.erjavec Added persistent caching for Gene Atlas Tissue expression widget.
(edit) @1439:1675ea01f6ce   2 years www-data Automated manifest update.
(edit) @1438:90a65dce88f0   2 years ales.erjavec Added ensembl gene matcher.
(edit) @1437:bfd2cbc0f248   2 years www-data Automated manifest update.
(edit) @1436:2e77cbf3ea1e   2 years ales.erjavec Get organism and genes in columns hint from orngDataCacing.data_hints. …
(edit) @1435:f92edff70a00   2 years www-data Automated manifest update.
(edit) @1434:0b48ce14100a   2 years ales.erjavec Sort values by number of up/down counts over all genes. Suppress the error …
(edit) @1433:5fed5fb96173   2 years www-data Automated manifest update.
(edit) @1432:4cbd1707461f   2 years ales.erjavec Handle Gene Atlas server error. "Smart" initial gene attribute selection.
(edit) @1431:fbb06a9de47b   2 years www-data Automated manifest update.
(edit) @1430:aee4fc56624f   2 years ales.erjavec Fixed table sorting.
(edit) @1429:d631f4d446a7   2 years www-data Automated manifest update.
(edit) @1428:73a6c6554c5c   2 years ales.erjavec Initial add of Gene Atlas Tissue Expression widget.
(edit) @1427:503577de4a1b   2 years www-data Automated manifest update.
(edit) @1426:0748ffb514c0   2 years ales.erjavec Check if proxyModel is not None in filter method.
(edit) @1425:fc9c91545a2a   2 years www-data Automated manifest update.
(edit) @1424:56f4abf21046   2 years ales.erjavec Added support for loading miRNA targets from microCosm files.
(edit) @1423:9f50b4a66153   2 years www-data Automated manifest update.
(edit) @1422:2b381e58061b   2 years markotoplak obiGO: GetEnrichedTerms uses all aspects by default.
(edit) @1421:be5f1dd6709a   2 years www-data Automated manifest update.
(edit) @1420:b6b5ec5b1dae   2 years ales.erjavec Modified the setup.py script. Added MANIFEST.in and README.txt files.
(edit) @1419:f3e619cef84a   2 years www-data Automated manifest update.
(edit) @1418:24216dbf63f6   2 years ales.erjavec Added AtlasConditionExperiment. Check for error response from Atlas.
(edit) @1417:4844132ad9fc   2 years www-data Automated manifest update.
(edit) @1416:a644a8a541d3   2 years markotoplak obiGEO: you can now set gene label for the transpose function.
(edit) @1415:1d0ffabfff65   2 years www-data Automated manifest update.
(edit) @1414:dce40883479a   2 years markotoplak obiAssess: removed test case printouts
(edit) @1413:8047e2f7fee4   2 years markotoplak obiAssess test script uses obiGeneSets.collections() in the right way.
(edit) @1412:6a251f5fe7e5   2 years www-data Automated manifest update.
(edit) @1411:4774fd79c8ba   2 years ales.erjavec Run gc.collect in onWidgetDelete.
(edit) @1410:2bae6d7b14fd   2 years www-data Automated manifest update.
(edit) @1409:4a01b57fe4aa   2 years ales.erjavec Caching the computed clustering.
(edit) @1408:9c47856dbbde   2 years www-data Automated manifest update.
(edit) @1407:19c39cf0f9d8   2 years ales.erjavec Using the LabelSelectionWidget from OWVulcanoPlot for target selection. …
(edit) @1406:c3a66197156a   2 years www-data Automated manifest update.
(edit) @1405:af2d0ae431a5   2 years ales.erjavec Speedup of GEO Data Sets filtering (only filter on full word completion or …
(edit) @1404:2c50284a94ed   2 years www-data Automated manifest update.
(edit) @1403:e1679f377f8a   2 years ales.erjavec Fixes for label layout.
(edit) @1402:e28a8edae66d   2 years www-data Automated manifest update.
(edit) @1401:efb3ad9c1851   2 years ales.erjavec Almost completely rewrote HeatMap to add support for heat-map splits. Now …
(edit) @1400:c35bb5fd978c   2 years www-data Automated manifest update.
(edit) @1399:8414d48f842e   2 years ales.erjavec
(edit) @1398:804b11241744   2 years www-data Automated manifest update.
(edit) @1397:14ae3a40546e   2 years ales.erjavec Caching intermediate filtering results. Added some more characters to …
(edit) @1396:d04e954faab1   2 years www-data Automated manifest update.
(edit) @1395:ac363dd23d69   2 years ales.erjavec Fixed auto commit functionality.
(edit) @1394:9bf22603f4c9   2 years www-data Automated manifest update.
(edit) @1393:27ba50e645b1   2 years mitar Removing svn:executable from a file.
(edit) @1392:1f7d25367c66   2 years mitar Reverting to r10542.
(edit) @1391:cd37f2bc8b81   2 years www-data Automated manifest update.
(edit) @1390:fc7b990aa912   2 years ales.erjavec Some bug fixes.
(edit) @1389:f5d41f4a273d   2 years www-data Automated manifest update.
(edit) @1388:e19308f4a701   2 years ales.erjavec Show error when the user selects all values. Clearing the plot when …
(edit) @1387:291a3f503741   2 years ales.erjavec Fixed an empty addon.xml file.
(edit) @1386:ee024faf9aa8   2 years ales.erjavec Output the data with the labeled genotype attributes. Add missing …
(edit) @1385:b4403b620014   2 years ales.erjavec Changed the way target labels are selected by the user in Vulcano Plot.
(edit) @1384:79c277299c63   2 years www-data Automated manifest update.
(edit) @1383:ad72d1ab59ea   2 years ales.erjavec Renamed Target Label group box to 'Group By'. Fixed warning.
(edit) @1382:84e8f0d3533a   2 years matija.polajnar bioinformatics: update the HTTP link in the addon.xml manifest.
(edit) @1381:002f6553e1b6   2 years www-data Automated manifest update.
(edit) @1380:63f53816cb20   2 years ales.erjavec Some changes to search hints.
(edit) @1379:76fe2cd1abcc   2 years www-data Automated manifest update.
(edit) @1378:b17690b7fcd9   2 years ales.erjavec Setting default buttons (clicked when pressing enter) on all widgets where …
(edit) @1377:4627c588c750   2 years markotoplak There was a bug in my last commit. Fixed
(edit) @1376:159b2ee03735   2 years markotoplak Import error reporting for PIPA. Now it reports wrong authentications as …
(edit) @1375:c0dc0956d5ef   2 years markotoplak Fixed bug in OWGenotypeDistances.separate_by, which caused the separated …
(edit) @1374:688f6403983d   2 years ales.erjavec Speedup of experiments filtering.
(edit) @1373:02a2783ce00f   2 years ales.erjavec Show warning when there are no samples with the selected annotations.
(edit) @1372:346fc53bc178   2 years ales.erjavec Using a non recursive method to construct the graphics scene's dendrogram …
(edit) @1371:399f17f58fd9   2 years markotoplak obiDicty: do not output lists, but convert them to strings. Fixed median …
(edit) @1370:f5fd34d00d5f   2 years ales.erjavec Changed context handler. Added s new icon.
(edit) @1369:e0f98405a21d   2 years ales.erjavec Renamed the 'Relevant attributes' box to 'Sort By', restored the old …
(edit) @1368:ae15e1830ccc   2 years markotoplak Sorting by field values (converts to integers when possible).
(edit) @1367:66cf5ac7e501   2 years ales.erjavec Changed the order of distance measures shown in the combo box. Pearson …
(edit) @1366:8d45633d4614   2 years ales.erjavec Changed the order of Relevant attributes and Separate by boxes. Output …
(edit) @1365:5515c4c64b15   2 years ales.erjavec Show an error message when data has no suitable feature labels.
(edit) @1364:387e03225529   2 years ales.erjavec Added commit button.
(edit) @1363:fce72b19ca69   2 years ales.erjavec Compute the distance matrix and send it on output signal.
(edit) @1362:5f56b6ad5f8f   2 years markotoplak distance computation functions.
(edit) @1361:b7fabffc1073   2 years ales.erjavec Added Genotype distances widget.
(edit) @1360:fc9ab2505af0   2 years ales.erjavec Bug fixes in Gene Selection widget.
(edit) @1359:58977a5171f3   2 years markotoplak obiDicty: speed up of averageAttributes
(edit) @1358:9a410c550601   2 years ales.erjavec Added a new base interface for all protein-protein interaction databases. …
(edit) @1357:999499ff1e4c   2 years ales.erjavec Show an error message when input data has no class variable and is missing …
(edit) @1356:a531fa6d7ae4   2 years ales.erjavec Added listdir method to obiData.FtpDownloader. Use listdir in …
(edit) @1355:cfa7394cb76b   2 years ales.erjavec Added to_networkx and to_graphviz methods.
(edit) @1354:f5dceb747aff   2 years ales.erjavec Can now load data from multiple processed matrix files.
(edit) @1353:cbffc94cb604   2 years ales.erjavec Added ArrayExpressExperiment class. Added classes and functions for …
(edit) @1352:4a2136565b48   2 years ales.erjavec Calling gc.collect() when discarding an loaded Annotations object …
(edit) @1351:c9470ca4ca88   2 years ales.erjavec Using intern function to reduce the memory consumption of loaded …
(edit) @1350:63636452235c   2 years ales.erjavec Added more documentation. Removed the unused caching parameters.
(edit) @1349:f82ea66d57ff   2 years ales.erjavec Reworked OBO file parsing. Handle escape characters in files. Added …
(edit) @1348:3642b9d48d66   2 years markotoplak Removed dependency on orngServerFiles.createPath
(edit) @1347:dd168923331f   2 years ales.erjavec Added some docstrings, added results parsing in the module level …
(edit) @1346:99978b5d0d5f   2 years ales.erjavec Fixed sample selection (only select samples that have a selected sample …
(edit) @1345:738b2b2377a2   2 years ales.erjavec Added a obiArrayExpress-test.py testing script, added format parameter to …
(edit) @1344:0fce937e623e   2 years ales.erjavec Changed get_atlas_info to get_atlas_summary, changed the search field from …
(edit) @1343:67c0a2030d8c   2 years ales.erjavec Improved ftplib.error_temp handling (waiting 3 seconds before retrying). …
(edit) @1342:3ac2a7774fbb   2 years ales.erjavec Added obiArrayExpress module. This module is used to query both …
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