source: orange-bioinformatics/_bioinformatics/obiGeneSets.py @ 1860:504bc511801c

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(edit) @1860:504bc511801c   6 months markotoplak obiGeneSets.collections raises an exception if gene sets are not found. …
(edit) @1836:b14df26ba71c   9 months ales.erjavec Reverted part of changeset 857938f13079 ('load_local' definition …
(edit) @1835:fa00a0fd32a9   10 months vid.flashpoint Fixed the exception handling in obiGeneSets.py
(edit) @1834:91f840200ae3   10 months vid.flashpoint Changed the exception value from KEGG.OrganismNotFound to …
(edit) @1828:857938f13079   10 months vid.flashpoint Added an organisms shortname() function to the obiTaxonomy.py to add short …
(edit) @1825:7187e6ba2114   10 months vid.flashpoint Added some missing info to the obiGeneAtlas.py API
(edit) @1818:ffa449bd9709   10 months vid.flashpoint Version 1 of the OWCustomSet.py widget
(edit) @1816:1ddb05ba025a   11 months vid.flashpoint Changed the hierarchy name of Custom gene sets in obiGeneSets.py. Moved …
(edit) @1814:c7d693f650af   11 months vid.flashpoint Added a genesets statistics function to obiGeneSets.py. Added additional …
(edit) @1812:6871643ec38f   11 months vid.flashpoint Custom genesets now use Custom Genesets hierarchy in obiGeneSets.py. …
(edit) @1807:666d56b81a52   11 months vid.flashpoint The OWtest.py prototype widget for custom gene sets now correctly imports …
(edit) @1805:c2e4880abd58   11 months vid.flashpoint Added functionality to obiGeneSets.py to remove locally stored gene sets. …
(edit) @1798:f1e73901a1d3   11 months vid.flashpoint Added Reactome Pathways genesets for humans
(edit) @1795:663192bd4469   11 months vid.flashpoint Removed obiCytobands.py and created genesets in obiGeneSets.py. …
(edit) @1794:3a530b619d7f   11 months vid.flashpoint Added Cytobands genesets and modified obiOMIM.py. Both need some extra …
(edit) @1782:e6ed6e7bced3   11 months vid.flashpoint Added Phenotypes to DictyMutants hierarchy
(edit) @1781:764dc2b10839   11 months vid.flashpoint First attempt at configuring Orange server update
(edit) @1780:5cc362d703bb   11 months vid.flashpoint DictyMutants geneset working
(edit) @1778:a94aec22f398   12 months vid.flashpoint Added pickling to obiDictyMutants.py, changed the URL in obiGeneSets.py's …
(edit) @1761:d8f3d4bb64fa   12 months vid.flashpoint Added obiDictyMutants.py
(edit) @1719:6e8861564778   20 months markotoplak Fixed update scripts for MeSH, GO, HomoloGene, NCBI_geneinfo, OMIM, PPI. …
(edit) @1716:4c4266f7c5a5   20 months markotoplak Removed the old version of obiKEGG. Renamed obiKEGG2 -> obiKEGG.
(edit) @1713:7113883f4437   20 months markotoplak Fixes for obiGeneSets. Compatible files were generated and uploaded to SF.
(edit) @1712:bcd52ead3d93   20 months markotoplak Classes for storing gene set data moved to Orange.bio.geneset. obiGeneSets …
(edit) @1707:7d692228fea1   20 months markotoplak Speed up of setsig (obiGeneSetSig).
(edit) @1643:2cfa80dac3d3   2 years mitar Fixing some imports. Marking widgets as prototypes.
(copy) @1636:10d234fdadb9   2 years mitar Restructuring because we will not be using namespaces.
copied from Orange/bioinformatics/obiGeneSets.py:
(edit) @1632:9cf919d0f343   2 years mitar Fixing imports.
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