Ticket #304 (closed bug: fixed)

Opened 6 years ago

Last modified 6 years ago

UpdateGenomicsDatabases ne dela na sveži inštalaciji

Reported by: marko Owned by: ales
Milestone: 2.6 Component: canvas
Severity: immediate Keywords: update, genomics, kegg
Cc: Blocking:
Blocked By:

Description

KEGG pričakuje, da ima shranjene datoteke, ki jih ni. Preveri, če dela s svežo inštalacijo.

Unhandled exception of type IOError occured at 13:54:08:
Traceback:
  File: orngDoc.py, line 270 in addWidget
  Code: newwidget = orngCanvasItems.CanvasWidget(self.signalManager, self.canvas, self.canvasView, widget, self.canvasDlg.defaultPic, self.canvasDlg, widgetSettings)
    File: orngCanvasItems.py, line 123 in __init__
    Code: self.instance.__init__(signalManager=signalManager)
      File: OWUpdateGenomicsDatabases.py, line 43 in __init__
      Code: self.keggOrganisms = obiKEGG.KEGGInterfaceLocal().list_organisms().items()
        File: obiKEGG.py, line 431 in list_organisms
        Code: return dict([(key, value[1]) for key, value in self._taxonomy.items()])
          File: obiKEGG.py, line 344 in __getattr__
          Code: self._load_taxonomy()
            File: obiKEGG.py, line 415 in _load_taxonomy
            Code: orgs = filter(lambda line:line.strip() and not line.startswith("#"), self._retrieve("genes/taxonomy").readlines())
              File: obiKEGG.py, line 428 in _retrieve
              Code: return open(self.local_database_path+filename)
                IOError: [Errno 2] No such file or directory: '/home/marko/.orange/buffer/kegg//genes/taxonomy'

Change History

comment:1 Changed 6 years ago by marko

S svežo inštalacijo sem mislil, da ni kakršnikolih Orangevih konfiguracijskih datotek na disku.

comment:2 Changed 6 years ago by ales

  • Status changed from new to closed
  • Resolution set to fixed
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