Ticket #309 (closed bug: fixed)

Opened 6 years ago

Last modified 6 years ago

obiKEGG - extracting files

Reported by: blaz Owned by: ales
Milestone: 2.6 Component: orng_modules
Severity: minor Keywords:
Cc: Blocking:
Blocked By:

Description

V obiKEGG se ob klicu (npr.):

import obiKEGG keggorg = obiKEGG.KEGGOrganism("sce") pathways = keggorg.list_pathways() genes = keggorg.get_genes()

vsakokrat razpakirajo vse datoteke:

opening tar file kegg_taxonomy.tar.gz extracting: genes/taxonomy extracting: genes/genome opening tar file kegg_organism_sce.tar.gz extracting: pathway/organisms/sce/sce_gene_map.tab opening tar file kegg_reference.tar.gz extracting: pathway/map_title.tab extracting: genes/organisms/sce/_genes.pickle

ceprav so ze bile razpakirane. modul naj to naredi le, ce:

  • teh datotek dejansko ni na disku ali
  • ce so, pa je datum tar.gz datoteke kasnejsi

Change History

comment:1 Changed 6 years ago by anonymous

  • Status changed from new to closed
  • Resolution set to fixed

Datoteke se razpakirajo ze ob downloadu.

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