Ticket #416 (closed bug: fixed)

Opened 5 years ago

Last modified 5 years ago

obiGO crash

Reported by: lanz Owned by: ales
Milestone: 2.6 Component: orng_modules
Severity: major Keywords: obiGO
Cc: Blocking:
Blocked By:

Description

Enrichment analiza se za nekatere gene sesuva (za vecino dela v redu):

import obiGO ontology = obiGO.Ontology.Load() annotations = obiGO.Annotations.Load("dicty", ontology=ontology) annotations.GetEnrichedTerms(DDB_G0291303?)

Traceback (most recent call last):

File "<interactive input>", line 1, in <module> File "C:\prog\Python25\lib\site-packages\orange\add-ons\Bioinformatics\obiGO.py", line 605, in GetEnrichedTerms

terms = self.ontology.ExtractSuperGraph(annotationsDict.keys())

File "C:\prog\Python25\lib\site-packages\orange\add-ons\Bioinformatics\obiGO.py", line 348, in ExtractSuperGraph

queue.update(set(id for typeId, id in self.terms[term].related) - visited)

KeyError: 'GO:0010812'

Change History

comment:1 Changed 5 years ago by ales

  • Status changed from new to closed
  • Resolution set to fixed
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