Ticket #418 (closed bug: fixed)

Opened 5 years ago

Last modified 5 years ago

Gene Info se zrusi ob prvem poganjanju na Dicty podatkih

Reported by: blaz Owned by: ales
Milestone: 2.6 Component: orng_modules
Severity: minor Keywords:
Cc: Blocking:
Blocked By:

Description

In sicer to stori, ce mu manjka dictyBase gene aliases. Ideja je, da morajo skripte same poskrbeti, da ce se ta datoteka rabi, da se jo downloada iz serverja.

Traceback:
 File: OWGUI.py, line 1389 in __call__
 Code: self.f(**kwds)
   File: OWGeneInfo.py, line 109 in setItems
   Code: info = obiGene.NCBIGeneInfo(self.organisms[min(self.organismIndex, len(self.organisms) - 1)])
     File: obiGene.py, line 86 in __init__
     Code: self.matcher.set_targets(self.keys())
       File: obiGene.py, line 638 in set_targets
       Code: matcher.set_targets(targets)
         File: obiGene.py, line 444 in set_targets
         Code: MatcherAliases.set_targets(self, targets)
           File: obiGene.py, line 387 in set_targets
           Code: ids = self.to_ids(target)
             File: obiGene.py, line 378 in to_ids
             Code: return self.mdict[gene]
               File: obiGene.py, line 435 in get_mdict
               Code: self.saved_mdict = create_mapping(self.aliases, self.ignore_case)
                 File: obiGene.py, line 426 in get_aliases
                 Code: self.aliases = self.load_aliases()
                   File: obiGene.py, line 466 in load_aliases
                   Code: return self.create_aliases()
                     IOError: [Errno 2] No such file or directory: '/Users/blaz/Library/Caches/orange/bigfiles/dictybase/information_mappings.pck.info'

Change History

comment:1 Changed 5 years ago by ales

  • Status changed from new to closed
  • Resolution set to fixed
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