Ticket #442 (closed bug: fixed)

Opened 5 years ago

Last modified 5 years ago

GO ima probleme z nekaterimi organizmi

Reported by: blaz Owned by: ales
Milestone: 2.6 Component: canvas
Severity: immediate Keywords:
Cc: Blocking:
Blocked By:

Description

Pocistil sem vse v bigfiles d:\application Data\orange\buffer\bigfiles\GO, nato pa v Update dodal tri file z rattus (GO, KEGG, NCBI). V GO widgetu se mi je med drugimi oraganizmi pojavil

Rattus norvegicus (rat)

ko ga izberem, dobim:

Unhandled exception of type UnknownSpeciesIdentifier occured at 13:38:04:
Traceback:
  File: OWGUI.py, line 1389 in __call__
  Code: self.f(**kwds)
    File: OWGOEnrichmentAnalysis.py, line 208 in SetAnnotationCallback
    Code: self.LoadAnnotation()
      File: OWGOEnrichmentAnalysis.py, line 394 in LoadAnnotation
      Code: self.annotations = obiGO.Annotations(self.annotationCodes[min(self.annotationIndex, len(self.annotationCodes)-1)], ontology = self.ontology, progressCallback=self.progressBarSet)
        File: obiGO.py, line 484 in __init__
        Code: a = self.Load(file, ontology, genematcher, progressCallback)
          File: obiGO.py, line 551 in Load
          Code: code = organism_name_search(org)
            File: obiTaxonomy.py, line 81 in f
            Code: res = func(*args, **kwargs)
              File: obiGO.py, line 844 in organism_name_search
              Code: return Annotations.organism_name_search(name)
                File: obiGO.py, line 510 in organism_name_search
                Code: raise tax.UnknownSpeciesIdentifier, org
                  UnknownSpeciesIdentifier: Rattus norvegicus (rat) 

Poleg tega organizma se mi clovek pojavlja dvakrat, in sicer kot:

Homo sapiens Homo sapiens (human)

Ce izberem slednjega, mi kresira.

Change History

comment:1 Changed 5 years ago by ales

  • Status changed from new to closed
  • Resolution set to fixed
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