Timeline


and

04/23/14: Today

19:55 Changeset in orange-bioinformatics [2080:770fd8663800] by Ales Erjavec <ales.erjavec@…>
defaultAdded an icon for Gene Network widget.
19:34 Changeset in orange-bioinformatics [2079:7fa187e80633] by Ales Erjavec <ales.erjavec@…>
defaultRemoved 'GeneMANIA' widget.
19:32 Changeset in orange-bioinformatics [2078:8ae426840341] by Ales Erjavec <ales.erjavec@…>
defaultAdded STRING network source to Gene Network widget.
19:30 Changeset in orange-bioinformatics [2077:d5b2bbf570b4] by Ales Erjavec <ales.erjavec@…>
defaultChanged 'updateSTRING.py' script to create databases by organisms.
19:30 Changeset in orange-bioinformatics [2076:953f4e453a7a] by Ales Erjavec <ales.erjavec@…>
defaultSplit the STRING database by organisms.
15:11 Changeset in orange-bioinformatics [2075:cab10ef5e800] by markotoplak
defaultRemoved obsolete GO documentation.
14:59 Changeset in orange-bioinformatics [2074:1a49add0965c] by markotoplak
defaultFixed updateGO to work with the updated go module.

04/18/14:

18:05 Changeset in orange-bioinformatics [2073:8f100ab564d5] by Ales Erjavec <ales.erjavec@…>
defaultDisable 'Venn Diagram' widget if one is already provided by Orange.
17:13 Changeset in orange-bioinformatics [2072:af7c5621ff08] by Ales Erjavec <ales.erjavec@…>
defaultAdded "Gene Network" widget.
16:27 Changeset in orange-bioinformatics [2071:9480fbe53b5c] by Ales Erjavec <ales.erjavec@…>
defaultFixed 'BioGRID.organisms' method.
15:50 Changeset in orange [11893:071088c2feba] by Ales Erjavec <ales.erjavec@…>
defaultCan use instance equality to build sets.
15:20 Changeset in orange [11892:85801c09468d] by Ales Erjavec <ales.erjavec@…>
defaultAdded 'REPLACES' descriptor.
15:03 Changeset in orange [11891:6760bd97e3de] by Ales Erjavec <ales.erjavec@…>
defaultMoved "Venn Diagram" widget from orange-bioinformatics (at rev …

04/16/14:

17:18 Changeset in orange-bioinformatics [2070:d4e03f6d648d] by Ales Erjavec <ales.erjavec@…>
defaultCopy input data name to output.
16:54 Ticket #1367 (Differential expression modifies the input attribtues 'labels') created by ales
When the "Add scores to output' option is enabled and the groups are …
16:30 Changeset in orange [11890:10e01cb421bf] by Ales Erjavec <ales.erjavec@…>
defaultAdded an option to specify the output data table name.
15:51 Changeset in orange-bioinformatics [2069:e10da8fef216] by markotoplak
defaultDocumentation updates.
11:55 Ticket #1365 (venn diagram - commit button does not work) closed by Ales Erjavec <ales.erjavec@…>
fixed: In [f4565c330c5fb86984eaa0d2e1a4857132813883/orange-bioinformatics]: …
11:54 Changeset in orange-bioinformatics [2068:f4565c330c5f] by Ales Erjavec <ales.erjavec@…>
defaultAdded missing callback for the 'Commit' button. (fixes #1365)
00:33 Ticket #1366 (Differential Expression widget does not remember threshold parameters) created by blaz
The widget Differential Expression remembers all other settings, but does …
00:18 Ticket #1365 (venn diagram - commit button does not work) created by blaz
In Venn Diagram widget I get the output only when "Commit on any change" …

04/15/14:

22:37 Changeset in orange-bioinformatics [2067:45066c66ef91] by markotoplak
defaultDicty documentation fixes.
22:01 Changeset in orange-bioinformatics [2066:40e08fbf951c] by markotoplak
defaultFixes to biomart documentation.
21:25 Changeset in orange-bioinformatics [2065:cb4e084c443b] by markotoplak
defaultFixes to arrayexpress documentation.
19:25 Changeset in orange [11889:d07c4b5343c5] by Ales Erjavec <ales.erjavec@…>
defaultAdded a new unified 'Distances' widget.
17:08 Changeset in orange-bioinformatics [2064:b7a3d649f5ee] by markotoplak
defaultAdded ppi, biomart and arrayexpress to docs (from docstrings).
15:52 Changeset in orange-bioinformatics [2063:2293d87d12ec] by markotoplak
defaultUpdates to dicty documentation.
15:14 Changeset in orange-bioinformatics [2062:cff000b424bf] by markotoplak
defaultDeleted class PIPA.
15:11 Changeset in orange-bioinformatics [2061:01338973c92e] by markotoplak
defaultSmall documentation changes. Made PIPAx independent of PIPA class.
13:32 Changeset in orange-bioinformatics [2060:f9b76446ac4d] by markotoplak
defaultFixed file name case.
13:04 Changeset in orange-bioinformatics [2059:a3492b4a5d63] by markotoplak
defaultVersion bump.
12:45 Ticket #1364 (Trac does not send email) closed by marko
fixed: Added a script to delete old downloads.
12:15 Ticket #1364 (Trac does not send email) created by marko
In between I have deleted some files on the server because the drive was …
11:16 Changeset in orange [11888:3a69a631624d] by Ales Erjavec <ales.erjavec@…>
defaultorange.css fix

04/14/14:

21:31 Changeset in orange-bioinformatics [2058:42ec691f6930] by blaz <blaz.zupan@…>
defaultDraft of GEO Data Sets widget documentation.
15:55 Changeset in orange-bioinformatics [2057:16f1bd0366f0] by Ales Erjavec <ales.erjavec@…>
defaultFixed icon rst class.
15:54 Changeset in orange-bioinformatics [2056:5c0dd2e414fe] by Ales Erjavec <ales.erjavec@…>
defaultCustomize sphinx documentation theme.

04/12/14:

22:09 Changeset in orange-bioinformatics [2055:7bafffd66eef] by blaz <blaz.zupan@…>
defaultFirst draft of documentation for Databases widget.
20:20 Ticket #1363 (problems with rendering of widget help pages) created by blaz
Widget help pages are not rendered correctly. See figure: …

04/10/14:

11:43 Changeset in orange-bioinformatics [2054:ed422ebafb9d] by markotoplak
defaultdicty: minor documentation updates.

04/09/14:

21:57 Changeset in orange-bioinformatics [2053:c25fb8a4dbbb] by markotoplak
defaultRenamed BufferSQLite -> CacheSQLite. dicty documentation updates.
16:32 Changeset in orange-bioinformatics [2052:0da6d858e5db] by markotoplak
defaultAdd forgotten documentation files.
16:31 Changeset in orange-bioinformatics [2051:a39fd5b751eb] by markotoplak
defaultStarted with the dicty documentation.
15:44 Changeset in orange-bioinformatics [2050:17993ebb0412] by markotoplak
defaultdicty.phenotypes documentation updates.
15:35 Changeset in orange-bioinformatics [2049:df676bc4bc00] by markotoplak
defaultDocumentation updates.
15:20 Changeset in orange-bioinformatics [2048:168c9aaae358] by markotoplak
defaultUpdate MeSH examples so that they run.
15:19 Changeset in orange-bioinformatics [2047:65c6fee4cd3d] by markotoplak
defaultUse the 2014 MeSH data base.
14:09 Changeset in orange-bioinformatics [2046:7b01ad960048] by markotoplak
defaultSlight edit of the GEO documentation.

04/08/14:

16:04 Changeset in orange-bioinformatics [2045:3daf2fce9ee0] by markotoplak
defaultMeSH: enrichment from utils.stats, cleanup serverfiles code.

04/07/14:

16:18 Changeset in orange-bioinformatics [2044:9e2d134f6acc] by markotoplak
defaultDocumentation for gene.homology.
15:33 Changeset in orange-bioinformatics [2043:e5ab1b621ee7] by markotoplak
defaultTaxonomy documentation.
14:49 Changeset in orange-bioinformatics [2042:3f1f69f5e60d] by markotoplak
defaultUpdates to GSEA documentation.

04/04/14:

17:07 Changeset in orange-bioinformatics [2041:9728b6dddc3b] by markotoplak
defaultGSEA documentation.
17:06 Changeset in orange-bioinformatics [2040:e39bd8601af8] by markotoplak
defaultFixed import.

04/03/14:

16:51 Changeset in orange-bioinformatics [2039:57edde9ab3e1] by markotoplak
defaultFixed imports in code samples.
13:04 Changeset in orange [11887:d95a255f103e] by Ales Erjavec <ales.erjavec@…>
defaultFixed an AttributeError in Edit Domain widget.
13:04 Changeset in orange [11886:a5fbbe6bcc0b] by Ales Erjavec <ales.erjavec@…>
defaultAttempt to recreate the shelve dbm if importing the current implementation …
11:39 Ticket #1356 ("nan is not in list" for neural.py after normalization with std 0) closed by Ales Erjavec <ales.erjavec@…>
fixed: In [9cb115c8df89a98afc5811315399d73139ea59ef/orange]: […]
11:34 Changeset in orange [11885:9cb115c8df89] by Ales Erjavec <ales.erjavec@…>
defaultPrevent division by zero in NeuralNetworkLearner/Classifier. (fixes …

04/01/14:

12:04 Changeset in orange [11884:b1a52b1d8e21] by Aleš Erjavec <ales.erjavec@…>
defaultMerged in …
03:22 Changeset in orange [11883:ea27938c69a1] by Jared Forsyth <jabapyth+bitbucket@…>
jaredly/fix-function-naming-to-match-the-files-1396315309042fix function naming to match the files

03/31/14:

14:34 Changeset in orange [11882:ab8e80815d54] by Ales Erjavec <ales.erjavec@…>
defaultAdded settings data versioning to OWBaseWidget.

03/28/14:

14:59 Ticket #1362 (MDS bug) closed by ales
fixed: This was already fixed. Update to the latest version.
14:39 Ticket #1362 (MDS bug) created by blaz
Aleš, the following bug appears when I am using MDS with the data that …
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