Timeline


and

04/08/09:

21:58 Changeset in orange [5958:90f065622b7c] by janezd <janez.demsar@…>
default- fixed a bug in saving attributes' attributes
21:50 Changeset in orange [5957:9a74dfaf9b04] by janezd <janez.demsar@…>
default- attributes of attributes (from the third line of .tab file) are now in …
14:32 Changeset in orange [5956:8876698df79b] by gregor <gregor@…>
default- sizes of the cells should be now appropriate also in case of float vals
13:45 Changeset in orange-bioinformatics [789:e2f6ba4ff7b2] by ales_erjavec <ales.erjavec@…>
default
13:37 Changeset in orange [5955:616fe92e7602] by gregor <gregor@…>
default- when connecting to test learners it will no longer create the support …
13:30 Ticket #399 (test learners ne pokaze kateri performance scori so dejansko aktivni) created by gregor
Ce das na canvas test learners widget in ga odpres ne bo v seznamu …
13:30 Changeset in orange-bioinformatics [788:cb6e303e14e7] by ales_erjavec <ales.erjavec@…>
default- updated obiGO documentation
13:23 Changeset in orange [5954:223e31aba5d4] by gregor <gregor@…>
default- pressing enter in the dialog will no longer open the Report dialog
12:45 Changeset in orange [5953:e2d1d9ed7a60] by ales_erjavec <ales.erjavec@…>
default- added updateNCBI_geneinfo
12:41 Ticket #388 (tags for NCBI gene) closed by ales
fixed
12:37 Changeset in orange [5952:1959f5889be3] by ales_erjavec <ales.erjavec@…>
default
12:23 Changeset in orange-bioinformatics [787:46ea3ceb85e0] by ales_erjavec <ales.erjavec@…>
default
12:08 Ticket #376 (ponavljanje stetja (progress bar) v HeatMap pri clustering with sorting) closed by ales
fixed: Potrebno updatati tudi orngClustering
12:07 Ticket #382 (heatmap crash when clustering) closed by ales
fixed
12:06 Changeset in orange-bioinformatics [786:13cb4f0630fe] by ales_erjavec <ales.erjavec@…>
default- fixed kernel RTTI exception, - better progress bar updates
12:05 Changeset in orange [5951:ef65ed5c54cf] by ales_erjavec <ales.erjavec@…>
default
12:02 Changeset in orange [5950:0a674f88ff59] by miha <miha.stajdohar@…>
default
11:46 Changeset in orange [5949:f5adbd89b10b] by ales_erjavec <ales.erjavec@…>
default
10:40 Changeset in orange [5948:b26548d2305d] by ales_erjavec <ales.erjavec@…>
default
09:01 Ticket #398 (test learners vrne math error) created by gregor
Test learners mi vrne exception: Unhandled exception of type ValueError …
08:33 Changeset in orange-bioinformatics [785:205f6608315f] by markotoplak
defaultobiGene: removed one print statement
08:11 Changeset in orange-bioinformatics [784:2be9f533ebf1] by markotoplak
defaultobiGene, obiTaxonomy: now it finds correct dicty

04/07/09:

20:39 Changeset in orange-bioinformatics [783:fb28d62b654b] by markotoplak
defaultNCBIGene: added special exception for dicty.
19:52 Changeset in orange-bioinformatics [782:5316aaef1676] by markotoplak
defaultNCBIGene info uses new gene matcher
15:34 Changeset in orange [5947:5dc664094ef3] by miha <miha.stajdohar@…>
default
13:09 Changeset in orange [5946:9adc69d163e9] by miha <miha.stajdohar@…>
defaultname components with GO terms
13:01 Changeset in orange-bioinformatics [781:1ba0741f816d] by markotoplak
defaultobiGene: tried to translate NCBI to new gene matcher (commented out for …
12:09 Changeset in orange [5945:a9ff2e3cdea4] by markotoplak
defaultorngServerFiles: added localpath_download
10:57 Changeset in orange-bioinformatics [780:b09d573af555] by markotoplak
defaultobiGene: preparing NCBI gene matcher
10:01 Changeset in orange-bioinformatics [779:b7f5c282b7d9] by markotoplak
defaultobiGene: dicty matching added.
09:37 Changeset in orange-bioinformatics [778:6b71afd4089e] by markotoplak
defaultwidgets/OWUpdateGenomicsDatabases.py: added dictybase support.
09:35 Changeset in orange-bioinformatics [777:14c0ba576d68] by markotoplak
defaultworked on matcher on dictybase
09:21 Changeset in orange [5944:49517a582c94] by markotoplak
defaultscripts building server files: added obiDictyBase

04/06/09:

19:53 Ticket #397 (GEO data sets - filtiranje po ID) closed by ales
fixed
19:53 Changeset in orange-bioinformatics [776:6e83bfd1a083] by ales_erjavec <ales.erjavec@…>
default
16:59 Ticket #397 (GEO data sets - filtiranje po ID) created by marko
Ce v vnosno polje "filter" napises direktno ID, ne najde nicesar. Fino bi …
16:19 Changeset in orange-bioinformatics [775:2e38a9e730c8] by markotoplak
defaultobiGene: case sensitive / insensitive property of gene matchers added.
13:12 Changeset in orange [5943:5498e0af5458] by ales_erjavec <ales.erjavec@…>
default
13:03 Ticket #396 (gene selection widget previsok) created by marko
Gene selection widget je previsok (ne paše na ločljivost 1024x768 v …
12:32 Changeset in orange [5942:64bd3ae5171b] by markotoplak
defaultorngClustering: obejct -> object when importing if no matplotlib present.
11:47 Changeset in orange-bioinformatics [774:6d0de5163a11] by ales_erjavec <ales.erjavec@…>
default- added obiGene, obiGEO
11:33 Changeset in orange [5941:bde705272dbb] by Mitar <Mitar@…>
defaultChanged program arguments of Fink selfupdate command.

04/05/09:

20:28 Ticket #395 (GSEA progress bar) closed by marko
invalid: Ze leto dni je not. Tudi verzija iz SVN ga ima (testiraj pravkar). Ce se …
17:25 Changeset in orange-bioinformatics [773:65ccd79124d6] by ales_erjavec <ales.erjavec@…>
default
17:04 Changeset in orange-bioinformatics [772:42f55196fca4] by ales_erjavec <ales.erjavec@…>
default
16:27 Ticket #395 (GSEA progress bar) created by blaz
marko, naredis en progress bar pri GSEA widgetu (vcasih dolgo traja, pa je …
15:34 Changeset in orange-bioinformatics [771:d666c0bad0f4] by ales_erjavec <ales.erjavec@…>
default
14:39 Ticket #383 (manjse spremembe v GO Enrichment Analysis widgetu) closed by ales
fixed
14:39 Changeset in orange-bioinformatics [770:001a7762b686] by ales_erjavec <ales.erjavec@…>
default- GUI changes
13:59 Ticket #386 (spremembe v Feature Selection (bioinformatics)) closed by ales
fixed
13:53 Ticket #391 (Vulcano Plot in podatki z geni v vrsticah) closed by ales
fixed
13:52 Changeset in orange-bioinformatics [769:c4f984c7800d] by ales_erjavec <ales.erjavec@…>
default- - using obiGEO.transpose
13:42 Ticket #389 (HeatMap rows to edit box) closed by anonymous
fixed
13:41 Changeset in orange-bioinformatics [768:e8fd4d1d43e6] by ales_erjavec <ales.erjavec@…>
default
13:33 Ticket #387 (Gene Info crashes when there is no NCBI gene info on the local disk) closed by anonymous
fixed
13:09 Ticket #394 (Feature selection widget naj pri izboru primerov nujno ohrani meta ...) closed by anonymous
fixed
13:05 Changeset in orange-bioinformatics [767:4be2f070ebe0] by ales_erjavec <ales.erjavec@…>
default- meta attribute handling
12:53 Ticket #394 (Feature selection widget naj pri izboru primerov nujno ohrani meta ...) created by blaz
Sedanji widget jih ne ohranja (probaj npr. z brown-selected.tab, kjer se …
12:29 Changeset in orange [5940:54238542d5af] by blaz <blaz.zupan@…>
defaultrewrote, new interface, now works with orngClustering and is way faster …
12:29 Changeset in orange [5939:065fd7d0809c] by blaz <blaz.zupan@…>
defaultadded spearman and pearson for example distance (the distance scoring code …
12:28 Changeset in orange [5938:0f16cccb65de] by blaz <blaz.zupan@…>
defaultadded spearman and pearson for example distance
12:20 Changeset in orange [5937:0ea5b4b798a9] by blaz <blaz.zupan@…>
defaultnew icons (no border)
12:14 Ticket #393 (Gene Info pocasen?) created by blaz
Gene Info porabi kaksnih pet sekund, cetudi mu dam na vhod samo nekaj …
12:11 Ticket #392 (Gene Info ne prikaze zadnjega NCBI ID) created by blaz
Ce menjas podatke, ki gredo v Gene Info, se za zadnji gen v tabeli NCBI ID …
11:33 Changeset in orange-bioinformatics [766:0907eb4406a9] by ales_erjavec <ales.erjavec@…>
default- tree widget speedup
10:56 Ticket #390 (Feature selection widget) closed by anonymous
fixed: You need to update orange/OrangeWidgets/OWHist.py for a fix.
00:41 Changeset in orange-bioinformatics [765:2b77e2decc09] by blaz <blaz.zupan@…>
defaultinitial commit of new icon
00:40 Changeset in orange-bioinformatics [764:d93bf7105429] by blaz <blaz.zupan@…>
defaultChanged icons and descdriptions.
00:39 Ticket #391 (Vulcano Plot in podatki z geni v vrsticah) created by blaz
Ales, ali lahko prosim se Vulcano Plot prilagodis tako, kot si FSS widget …

04/04/09:

23:25 Ticket #390 (Feature selection widget) created by blaz
Moving a pointer (mouse) over the empty histogram (no data in the widget): …
22:12 Changeset in orange [5936:406ff99adb6e] by ales_erjavec <ales.erjavec@…>
default
21:53 Changeset in orange-bioinformatics [763:74fd4589436c] by ales_erjavec <ales.erjavec@…>
default- using obiGEO.transpose
21:53 Changeset in orange-bioinformatics [762:549c7ed9a784] by ales_erjavec <ales.erjavec@…>
default
21:30 Ticket #389 (HeatMap rows to edit box) created by blaz
Ali lahko prosim v HeatMap Merge->Rows zamenjas slider z entry box (tisti, …
21:05 Changeset in orange [5935:40d3c0d96e30] by blaz <blaz.zupan@…>
defaultadded display of variable attributes (for now just for "group")
19:46 Changeset in orange-bioinformatics [761:dc742401f91b] by blaz <blaz.zupan@…>
defaultlabels attributes with sample id ("group" attribute)
19:17 Changeset in orange-bioinformatics [760:49adc34ae028] by blaz <blaz.zupan@…>
defaultadded transpose(data)
17:45 Ticket #388 (tags for NCBI gene) created by blaz
Tags for "NCBI gene info" files should include the name of the organism. …
17:40 Ticket #387 (Gene Info crashes when there is no NCBI gene info on the local disk) created by blaz
[…]

04/03/09:

22:29 Ticket #381 (Dodatni atributi atributa v tretji vrstici .tab) closed by janez
fixed
22:20 Changeset in orange [5934:47bf8adf8e01] by janezd <janez.demsar@…>
default- tab delimited files can now have extra flags (name=value) which get …
21:06 Changeset in orange-bioinformatics [759:b951e540c3a8] by ales_erjavec <ales.erjavec@…>
default
20:44 Changeset in orange [5933:507afa7c0892] by ales_erjavec <ales.erjavec@…>
default
15:35 Changeset in orange-bioinformatics [758:e2cf35088f30] by ales_erjavec <ales.erjavec@…>
default- added null distribution computation - added threshold spin boxes
15:33 Changeset in orange [5932:b6ae0efb28d5] by ales_erjavec <ales.erjavec@…>
default
11:25 Changeset in orange-bioinformatics [757:4cb4ebead672] by markotoplak
defaultobiGene: case (in)sensitivity
10:05 Changeset in orange-bioinformatics [756:b3c7bc829d01] by markotoplak
defaultobiGene: minor modifications, testing.

04/02/09:

20:51 Changeset in orange-bioinformatics [755:b06bd4978f12] by markotoplak
defaultobiGene: changed comments.
14:43 Changeset in orange-bioinformatics [754:58308d394433] by ales_erjavec <ales.erjavec@…>
default- added progress bar
14:33 Ticket #386 (spremembe v Feature Selection (bioinformatics)) created by blaz
1) When cursor is over (or close to) any of the bars that change the …
13:47 Changeset in orange-bioinformatics [753:897c16ae0b14] by ales_erjavec <ales.erjavec@…>
default- added cached organism search to obiTaxonomy, obiKEGG and obiGO for use …
13:16 Changeset in orange-bioinformatics [752:eff03811e0f4] by blaz <blaz.zupan@…>
defaultminor corrections (change of name)
11:15 Changeset in orange [5931:68d4ec31a662] by miha <miha.stajdohar@…>
defaultchanged newVar.values = bound[0].values[:] to newVar.values = …
11:14 Ticket #385 (StringList se cudno obnasa na Ubuntu 64bit) created by miha
ne dela: newVar.values = bound[0].values[:] dela: newVar.values = …
11:13 Ticket #384 (Prosim, ce lahko preveris, kako je z normalizacijo reliefFa v Orange-u.) created by lan
10:43 Changeset in orange [5930:aa96e758991e] by Mitar <Mitar@…>
defaultBugfixed daily VMware script.

04/01/09:

23:09 Changeset in orange-bioinformatics [751:4e1a86a3a611] by markotoplak
defaultobiGene: comments added for gene matcher.
23:08 Changeset in orange [5929:1c7a23a319fc] by janezd <janez.demsar@…>
default- fixed a typo
17:03 Ticket #369 (to_taxid v obiTaxonomy vraca set) closed by ales
fixed: Sem popravil v dokumentaciji
17:00 Changeset in orange-bioinformatics [750:156878a7fe11] by ales_erjavec <ales.erjavec@…>
default
16:42 Ticket #375 (HeatMap crash pri reload podatkov) closed by ales
fixed
16:42 Changeset in orange-bioinformatics [749:99c309cde4ec] by ales_erjavec <ales.erjavec@…>
default- fixed exception on data reload (trac ticket #375)
16:39 Ticket #383 (manjse spremembe v GO Enrichment Analysis widgetu) created by blaz
V Input naj bo cisto zgoraj skatla "Info" z dvemi vrsticami: XXX genes on …
16:28 Changeset in orange-bioinformatics [748:8b358921d75d] by ales_erjavec <ales.erjavec@…>
default
16:01 Changeset in orange [5928:e395135d60a6] by miha <miha.stajdohar@…>
defaultfixed function min error on linux
15:43 Ticket #382 (heatmap crash when clustering) created by blaz
Take GEO Datasets, take gds1049, with Genes in the row (Genes or spots + …
15:36 Ticket #372 (Gene Info widget) closed by ales
fixed
15:35 Ticket #371 (provide access to ncbi gene info, add to obiGene.py) closed by ales
fixed
12:33 Changeset in orange [5927:1e324ff69b46] by Mitar <Mitar@…>
defaultSmall improvements to daily VMware script.
12:28 Changeset in orange [5926:85049688b170] by Mitar <Mitar@…>
defaultAdded newline at the end of the script (strange Eclipse).
12:27 Changeset in orange [5925:446d49452fb3] by Mitar <Mitar@…>
defaultMade daily VMware script more robust to Mac OS X autologin failures (which …
12:05 Ticket #381 (Dodatni atributi atributa v tretji vrstici .tab) created by janez
Blaz Zupan: > Bi se dalo atributom v Orange-u v tab datoteki pripeti se …
10:38 Changeset in orange-bioinformatics [747:c831e7898a16] by markotoplak
defaultobiGene: added helper function for building of gene matchers
09:21 Changeset in orange-bioinformatics [746:b09a1e333677] by markotoplak
defaultobiGene: added direct matcher.
00:56 Changeset in orange [5924:de5f0499f036] by martin <martin@…>
default
00:54 Changeset in orange [5923:f6ac7f74cb24] by martin <martin@…>
defaultChanges to rule learning.
00:53 Changeset in orange [5922:8c32d454e870] by martin <martin@…>
default

03/31/09:

22:19 Changeset in orange-bioinformatics [745:fd17842846a4] by ales_erjavec <ales.erjavec@…>
default- added organism_name_search methods
21:25 Changeset in orange-bioinformatics [744:99df932307cb] by ales_erjavec <ales.erjavec@…>
default- better unicode handling (ignore errors)
21:00 Changeset in orange-bioinformatics [743:daebcbd1e68f] by ales_erjavec <ales.erjavec@…>
default- fixed unicode filterString problem
20:25 Changeset in orange-bioinformatics [742:ef9f82853908] by ales_erjavec <ales.erjavec@…>
default- added GEO domain
16:36 Changeset in orange-bioinformatics [741:859d0dcf6002] by ales_erjavec <ales.erjavec@…>
default- added table sorting
16:01 Changeset in orange-bioinformatics [740:dccfd4ba7c38] by blaz <blaz.zupan@…>
defaultcorrection of several bugs (data -> gdsdata, ...)
15:53 Changeset in orange-bioinformatics [739:1f111406398f] by ales_erjavec <ales.erjavec@…>
default- added Samples column, pubmed links
15:26 Changeset in orange-bioinformatics [738:879e5a6c4f65] by ales_erjavec <ales.erjavec@…>
default
15:26 Changeset in orange-bioinformatics [737:94a7d66ec290] by ales_erjavec <ales.erjavec@…>
default- bug fixes
14:43 Ticket #380 (Gene Info crashes on change of the organism) closed by anonymous
fixed
14:41 Changeset in orange-bioinformatics [736:c1b3a7ef58a4] by ales_erjavec <ales.erjavec@…>
default- bug fixes
14:26 Ticket #380 (Gene Info crashes on change of the organism) created by blaz
With an empty Gene Info (no data in) I change the organism from Mus …
09:46 Changeset in orange-bioinformatics [735:16a301c96cd4] by blaz <blaz.zupan@…>
defaultminor corrections, also changed some names of class methods

03/30/09:

22:28 Changeset in orange-bioinformatics [734:3952d4d23196] by markotoplak
defaultobiGene: added gene matcher, development version
15:47 Changeset in orange-bioinformatics [733:cd518be55541] by blaz <blaz.zupan@…>
defaultGene Expression Omnibus module, currently implements access to data sets …
15:38 Changeset in orange [5921:65666e868c87] by miha <miha.stajdohar@…>
default
15:36 Changeset in orange [5920:2c0ef7d4a31f] by miha <miha.stajdohar@…>
defaultdocstring corrections
15:33 Changeset in orange [5919:e14e14d33c52] by miha <miha.stajdohar@…>
default
15:29 Changeset in orange [5918:99da723b868b] by miha <miha.stajdohar@…>
default
15:25 Changeset in orange [5917:0e46aa0de75a] by miha <miha.stajdohar@…>
default
15:25 Changeset in orange [5916:c3ddb3c9bd47] by miha <miha.stajdohar@…>
default
15:25 Changeset in orange [5915:3e902892feae] by miha <miha.stajdohar@…>
default
15:06 Changeset in orange [5914:b56c4c1dc375] by miha <miha.stajdohar@…>
default
14:49 Changeset in orange [5913:1c49418f0e24] by miha <miha.stajdohar@…>
defaultnew way for reading network
14:43 Changeset in orange [5912:14e5f67ad5b4] by miha <miha.stajdohar@…>
default
14:43 Changeset in orange [5911:ad94a2c32058] by miha <miha.stajdohar@…>
default
14:40 Changeset in orange [5910:05c86db317f6] by miha <miha.stajdohar@…>
defaultnetwork can now be initialized without any arguments
13:06 Changeset in orange [5909:44b3f73afc03] by miha <miha.stajdohar@…>
defaultreadNetwork / writeNetwork is now part of orngNetwork.Network class
12:56 Changeset in orange-bioinformatics [732:57759a2b06ab] by ales_erjavec <ales.erjavec@…>
default
11:35 Changeset in orange [5908:1c2e5a208146] by miha <miha.stajdohar@…>
default
11:33 Changeset in orange [5907:42ae29643f27] by miha <miha.stajdohar@…>
default
11:33 Changeset in orange [5906:58fc270b3463] by miha <miha.stajdohar@…>
default
11:32 Changeset in orange [5905:83d970048d02] by miha <miha.stajdohar@…>
defaultNetwork should now be included from orngNetwork

03/29/09:

20:58 Changeset in orange [5904:e094e09031d1] by miha <miha.stajdohar@…>
defaultpredicting widgets on right click on canvas
20:28 Changeset in orange [5903:3269f680e745] by miha <miha.stajdohar@…>
defaultlogging addLink events

03/28/09:

23:01 Changeset in orange [5902:35c2eb97f760] by janezd <janez.demsar@…>
default- fixed a memory leak (PyList_Append does not steal references!)
22:58 Ticket #378 (memory leak in native()) closed by janez
fixed: Tega pa ze dolgo nismo imeli. ;)
22:57 Changeset in orange [5901:288353961a93] by janezd <janez.demsar@…>
default- fixed a memory leak in Example.native (obviously somebody, that is, me, …
13:03 Changeset in orange [5900:25924f0e8b0c] by blaz <blaz.zupan@…>
defaultcrashed for tiny files (speed=0, division by zero). corrected.
11:45 Ticket #379 (Category name blank) created by anonymous
When I add new category (Bioinformatics) through Canvas Options -> Widget …
08:50 Changeset in orange [5899:486deccb5586] by blaz <blaz.zupan@…>
defaultadded update and needs_update
08:49 Changeset in orange [5898:e1db371ab558] by blaz <blaz.zupan@…>
defaultadded update and needs_update
08:48 Changeset in orange [5897:9ea6bed02f54] by blaz <blaz.zupan@…>
defaultregression test script for orngServerFiles. Checks single file update.

03/27/09:

17:15 Changeset in orange [5896:6b6f41703ad0] by blaz <blaz.zupan@…>
defaultadded two more functions (remove local file and module)
17:14 Changeset in orange [5895:5947da52bf25] by blaz <blaz.zupan@…>
defaultadded two more functions (remove local file and module)
17:13 Changeset in orange [5894:2dd205051aea] by blaz <blaz.zupan@…>
defaulta regression test script for orngServerFiles, initial commit
17:13 Changeset in orange [5893:178146d380fc] by blaz <blaz.zupan@…>
defaulta regression test script for orngServerFiles, initial commit
14:44 Changeset in orange-bioinformatics [731:6b71b0f1f79e] by ales_erjavec <ales.erjavec@…>
default- fixed table widget selection
14:43 Changeset in orange-bioinformatics [730:9c6a019d1459] by ales_erjavec <ales.erjavec@…>
default

03/26/09:

15:58 Changeset in orange-bioinformatics [729:38c7f125f2dc] by ales_erjavec <ales.erjavec@…>
default
15:10 Changeset in orange [5892:a5667fd20f52] by miha <miha.stajdohar@…>
defaultremoved replace ' ' with (not needed)
14:54 Changeset in orange-bioinformatics [728:66a6fba38eeb] by ales_erjavec <ales.erjavec@…>
default
14:53 Changeset in orange-bioinformatics [727:76b9c575a315] by ales_erjavec <ales.erjavec@…>
default
13:32 Changeset in orange-bioinformatics [726:0f6271d653dc] by ales_erjavec <ales.erjavec@…>
default-fixed gene name translator
13:15 Ticket #327 (test mailov) closed by anonymous
fixed: Janez je nastavil mail server na "ns.fri.uni-lj.si".
11:08 Changeset in orange-bioinformatics [725:b39d4933ce83] by ales_erjavec <ales.erjavec@…>
default
09:12 Changeset in orange-bioinformatics [724:0bb163c74df3] by tomazc <tomaz.curk@…>
default
08:02 Changeset in orange-bioinformatics [723:f233034da297] by blaz <blaz.zupan@…>
defaultcentered column labels, increased max column width
07:58 Changeset in orange [5891:1fb5a24df3cf] by blaz <blaz.zupan@…>
default<a name="XX"/> -> <a name="XX"></a> (previous version failed to work in …

03/25/09:

22:23 Changeset in orange [5890:d44b057dbc13] by blaz <blaz.zupan@…>
defaultmoved out some comments
22:22 Changeset in orange [5889:4a810b4472bc] by blaz <blaz.zupan@…>
defaultreduced CV to 3 to spare time
15:48 Changeset in orange [5888:ae9c8553088a] by miha <miha.stajdohar@…>
defaultadded some comments
15:44 Ticket #378 (memory leak in native()) created by lanz
Conversion from Example to native python lists has a memory leak. Try the …
15:40 Changeset in orange [5887:c59e6087f0c3] by miha <miha.stajdohar@…>
default
14:52 Changeset in orange [5886:eec331fe7df9] by lanz <lan.zagar@…>
defaultKmeans code and documentation
14:44 Changeset in orange [5885:51325c373354] by miha <miha.stajdohar@…>
defaultadded separator color to qt css
14:33 Changeset in orange [5884:764329d53a92] by miha <miha.stajdohar@…>
defaultcode refactoring
14:28 Changeset in orange [5883:cfdeb237a2b5] by miha <miha.stajdohar@…>
defaultfixed a bug, connected with white spaces
14:09 Changeset in orange [5882:6bc6d77c0839] by gregor <gregor@…>
default
13:58 Changeset in orange [5881:9523c4cae9b2] by miha <miha.stajdohar@…>
defaultadded quick widget
11:19 Ticket #377 (na Mac OS X clustering v HeatMap widgetu ne dela) created by blaz
Cim vkljucis clustering v tem widgetu se razsuje: […]
11:10 Changeset in orange-bioinformatics [722:1af3b6a64d86] by ales_erjavec <ales.erjavec@…>
default- added NCBI_geneinfo domain
10:02 Changeset in orange-bioinformatics [721:a6f0fbab201c] by markotoplak
defaultobiGsea: tranformation of columns and rows noe works for a list of tables.
07:12 Ticket #376 (ponavljanje stetja (progress bar) v HeatMap pri clustering with sorting) created by blaz
Ce je vkljucen "Clustering with sorting" v HeatMap potem gre progress bar …
07:05 Ticket #375 (HeatMap crash pri reload podatkov) created by blaz
File. V file izberi iris.tab. Povezi ga na HeatMap. V file pritisni …
06:58 Ticket #374 (poravnava dendrograma in barvne matrike v HeatMap) created by blaz
Pri kakrsnikoli vrednosti parametra Merge, ki je drugacna od 1, sta …
06:58 Ticket #373 (poravnava dendrograma in barvne matrike v HeatMap) created by blaz
Pri kakrsnikoli vrednosti parametra Merge, ki je drugacna od 1, sta …

03/24/09:

16:29 Changeset in orange [5880:abfffcd02191] by miha <miha.stajdohar@…>
defaultupdated read history file
16:23 Changeset in orange-bioinformatics [720:82603dbd411f] by ales_erjavec <ales.erjavec@…>
default- added algorithmic approximation of ln(n!)
16:20 Changeset in orange [5879:a20ad47efc37] by miha <miha.stajdohar@…>
defaultadded some functions for history analysis

03/23/09:

22:00 Ticket #372 (Gene Info widget) created by blaz
Implementiraj Gene Info (NCBI) widget. Opis widgeta je na: …
16:25 Changeset in orange-bioinformatics [719:94f7be9f8d31] by blaz <blaz.zupan@…>
defaultadded a mock-up gene name matcher (self.translate)
15:21 Changeset in orange [5878:929ed27d42ce] by ales_erjavec <ales.erjavec@…>
default
14:48 Changeset in orange [5877:1ae315dab8e1] by ales_erjavec <ales.erjavec@…>
default- added matplotlib ploting
11:19 Ticket #354 (GO Enrichment Analysis (Filter)) closed by ales
fixed
11:15 Ticket #370 (exact search in obiTaxonomy) closed by ales
fixed
11:13 Ticket #355 (OWDistributions crkne na string attributih) closed by ales
fixed
10:44 Changeset in orange-bioinformatics [718:ec997c138f9e] by ales_erjavec <ales.erjavec@…>
default
09:46 Changeset in orange-bioinformatics [717:4be76c116488] by ales_erjavec <ales.erjavec@…>
default-added species search
00:58 Changeset in orange-bioinformatics [716:eb1fef3262b8] by ales_erjavec <ales.erjavec@…>
default

03/22/09:

15:57 Changeset in orange [5876:22a3a0dd9fa9] by blaz <blaz.zupan@…>
defaultremoving NearestNeighbours.htm (renamed to include "k")
15:56 Changeset in orange [5875:8233a9246458] by blaz <blaz.zupan@…>
defaultrenaming from NearestNeighbours.htm

03/21/09:

19:47 Changeset in orange-bioinformatics [715:b80e6c46495d] by markotoplak
defaultobiDicty: when fetchig data, add chipids to data table annotations

03/20/09:

17:01 Changeset in orange [5874:f24b88808511] by lanz <lan.zagar@…>
defaultChanges in KMeans, added plot_silhouette.
11:53 Changeset in orange-bioinformatics [714:d3243ff30775] by ales_erjavec <ales.erjavec@…>
default- added get_gene_aliases function

03/19/09:

19:58 Changeset in orange [5873:f33a12cc3f9f] by lanz <lan.zagar@…>
default
14:08 Changeset in orange [5872:58fac2e40273] by miha <miha.stajdohar@…>
defaultAuto load edges and links data
13:19 Changeset in orange-bioinformatics [713:3aabc4ca3657] by ales_erjavec <ales.erjavec@…>
default- added exact argument to search
12:42 Ticket #360 (graph_analyses.py crashes) closed by miha
fixed
12:42 Changeset in orange [5871:cea0b724311d] by miha <miha.stajdohar@…>
defaultfixed some problems linked to new orangeom.Network structure
11:53 Ticket #371 (provide access to ncbi gene info, add to obiGene.py) created by blaz
see …

03/18/09:

21:38 Changeset in orange [5870:e16b06825ebb] by janezd <janez.demsar@…>
default- random_sort now uses stable_sort to get the same results on all …
18:00 Changeset in orange [5869:a7ab32c51d8d] by janezd <janez.demsar@…>
default
17:58 Changeset in orange [5868:32c2207b50bf] by janezd <janez.demsar@…>
default- RandomGenerator can now give integer randoms in the given range
17:13 Changeset in orange [5867:8c506f1f2302] by janezd <janez.demsar@…>
default
16:39 Changeset in orange-bioinformatics [712:daa111b50644] by blaz <blaz.zupan@…>
defaultadded exact=False to search
16:37 Ticket #370 (exact search in obiTaxonomy) created by blaz
Ali lahko dodas argument exact k funkciji search, tako da (sem ze dodal v …
16:24 Changeset in orange-bioinformatics [711:a7fc14807c72] by blaz <blaz.zupan@…>
defaultfixed an error ( > -> </dt>)
16:21 Changeset in orange-bioinformatics [710:2caf6e6d1dac] by blaz <blaz.zupan@…>
defaulttaxids() added
15:29 Ticket #369 (to_taxid v obiTaxonomy vraca set) created by blaz
V dokumentaciji pise "See if the organism <code>code</code> is a valid …
15:14 Changeset in orange-bioinformatics [709:56505829be32] by blaz <blaz.zupan@…>
defaultregression test, part of obiTaxonomy documentation, initial commit
14:29 Ticket #367 (obiTaxonomy taxids) closed by anonymous
fixed
14:26 Changeset in orange-bioinformatics [708:91da63d9dfde] by ales_erjavec <ales.erjavec@…>
default- added taxids function
14:22 Ticket #368 (ExampleDistance widget crashes when there are too many examples) created by miha
Input was 50.000 examples in example table. Canvas closes, error report: …
14:15 Ticket #367 (obiTaxonomy taxids) created by blaz
V obiTaxonomy dodaj funkcijo taxids(), ki vrne listo seznam vseh tex …
12:29 Changeset in orange-bioinformatics [707:671e9b95c6e4] by blaz <blaz.zupan@…>
defaultadded common_taxid() and essential_taxids()
12:29 Changeset in orange-bioinformatics [706:fbc004a4f25a] by blaz <blaz.zupan@…>
defaultadded common_taxid() and essential_taxids(), and an example
12:16 Ticket #366 (links to update information page from obiTaxonomy documentation) created by blaz
This now says: "These are also the organisms for which the information …
11:50 Ticket #365 (svm-custom-kernel.py crashes) closed by ales
fixed
11:49 Changeset in orange [5866:676d9f5baaa2] by ales_erjavec <ales.erjavec@…>
default

03/17/09:

22:37 Changeset in orange-bioinformatics [705:d71ca1e59393] by markotoplak
defaultGsea: fixed widget to work with precalculated correlations in a single …
18:47 Ticket #365 (svm-custom-kernel.py crashes) created by blaz
Regresijski test na skripti doc/modules/svm-custom-kernel.py javi napako: …
18:20 Ticket #364 (Delete Widget Settings ne zbrise settingsov za add-on-e) created by blaz
Pri instaliranem modulu za bioinformatiko (pri meni se ta zavihek imenuje …
17:53 Changeset in orange-bioinformatics [704:de89ddaec94a] by blaz <blaz.zupan@…>
defaultchanged a few labels in GUI
14:47 Changeset in orange [5865:3b681e7b65f8] by ales_erjavec <ales.erjavec@…>
default
13:00 Changeset in orange [5864:ebb2900be81a] by ales_erjavec <ales.erjavec@…>
default- changed default svm_type to Nu_SVC

03/16/09:

15:44 Ticket #363 (LinearLearner) created by blaz
Ales, ali lahko prosim v dokumentacijo …
14:23 Changeset in orange [5863:d5761017a9b7] by blaz <blaz.zupan@…>
defaultreports on regression script coverage of various modules, initial commit
13:38 Changeset in orange [5862:b43ae51edae4] by blaz <blaz.zupan@…>
defaultnow fully implements testing of text and obi modules
13:31 Changeset in orange [5861:ec55b903521a] by blaz <blaz.zupan@…>
defaultinitial commit of the regression test result for this script
13:30 Changeset in orange [5860:1ab3910ee321] by blaz <blaz.zupan@…>
defaultinitial commit of the regression test result for this script
13:30 Changeset in orange [5859:07f5c1963eb0] by blaz <blaz.zupan@…>
defaultinitial commit of the regression test result for this script
12:49 Changeset in orange [5858:30756e43c3d4] by blaz <blaz.zupan@…>
defaultinitial commit of the regression test result for this script
10:30 Changeset in orange-bioinformatics [703:fc045bd88b54] by ales_erjavec <ales.erjavec@…>
default
10:30 Changeset in orange-bioinformatics [702:df5fa79c2c45] by ales_erjavec <ales.erjavec@…>
default

03/14/09:

21:48 Changeset in orange [5857:715a69b50a78] by blaz <blaz.zupan@…>
defaultthe order of examples that are printed out changed, otherwise looks like …
21:44 Ticket #362 (domainDepot.py crash) created by blaz
doc/reference/domainDepot.py ne dela vec, javi: […]
21:41 Changeset in orange [5856:ad30b1b25cfb] by blaz <blaz.zupan@…>
defaultNumeric -> numpy
18:32 Ticket #361 (basket.py (regression test) crashes) created by blaz
Testna skripta doc/reference/basket.py najde bug: […]
18:24 Changeset in orange [5855:2e2c14f2c5e8] by blaz <blaz.zupan@…>
defaultremoved
18:23 Changeset in orange [5854:3be24c4f08ed] by blaz <blaz.zupan@…>
defaultchanged name from RandomClassifier.py
18:21 Changeset in orange [5853:c64a3d83c3c1] by blaz <blaz.zupan@…>
defaultrandomclassifier.py -> random_classifier.py
18:21 Changeset in orange [5852:2656bccfd12a] by blaz <blaz.zupan@…>
defaultrandomclassifier.py -> random_classifier.py
18:17 Ticket #360 (graph_analyses.py crashes) created by blaz
Testna skripta doc/reference/graph_analyses.py ne dela vec: […]
18:13 Changeset in orange [5851:4c4bcb1a0b86] by blaz <blaz.zupan@…>
defaultthe second part of assoc-rule.py, w/o fancy printout (just for regression …
18:13 Changeset in orange [5850:8c887277ba67] by blaz <blaz.zupan@…>
defaultsplit the script to two parts (this one is just like it used to be)
18:09 Changeset in orange [5849:2cd285a22ce4] by blaz <blaz.zupan@…>
defaultthe second part of assoc-agrawal, w/o fancy printout (just for regression …
18:08 Changeset in orange [5848:10f9b68b5ec8] by blaz <blaz.zupan@…>
defaultsplit the script to two parts (this one is just like it used to be)
12:49 Changeset in orange [5847:1b4716b61fb1] by blaz <blaz.zupan@…>
defaulteverything ok, new code was added to the script (previous part of code ok)
12:45 Changeset in orange [5846:4e5ead016c08] by blaz <blaz.zupan@…>
defaultmoved to doc/modules
12:44 Changeset in orange [5845:850e43d274c6] by blaz <blaz.zupan@…>
defaultmoved from doc/reference and renamed from testRulelearner
12:42 Changeset in orange [5844:c8232c7d1715] by blaz <blaz.zupan@…>
defaultchanged, but not very substantially
12:39 Changeset in orange [5843:226de2ea1f72] by blaz <blaz.zupan@…>
defaultUpper_Filled -> UpperFilled
12:24 Changeset in orange [5842:782920ebb8cb] by blaz <blaz.zupan@…>
defaultreduced precision on the output (to 2 digits)
12:24 Changeset in orange [5841:a521215f39bc] by blaz <blaz.zupan@…>
defaultminor changes
12:23 Changeset in orange [5840:9973bc67bc1d] by blaz <blaz.zupan@…>
defaultchanged number of folds (to 3)
12:06 Changeset in orange [5839:e93e5cd2d985] by blaz <blaz.zupan@…>
defaultscript output changed slightly (precision set to 2 digits)
12:02 Changeset in orange [5838:e4e41c9cae4c] by blaz <blaz.zupan@…>
default< -> =< and >= -> >
12:00 Changeset in orange [5837:949f924fb71c] by blaz <blaz.zupan@…>
defaultminor change (3rd decimal)
11:57 Changeset in orange [5836:2f12faf9946b] by blaz <blaz.zupan@…>
defaultminor changes (3rd decimal)
11:55 Changeset in orange [5835:dfd06e23d4bc] by blaz <blaz.zupan@…>
defaultminor changes in CA of knn, also set precision to 3 digits
11:53 Changeset in orange [5834:0569c0ca4f15] by blaz <blaz.zupan@…>
defaultprecision when reporting classification accuracy set to 3
11:34 Ticket #359 (__dict__ razreda orangeClassifier in dedovanje) created by blaz
Spodnje dela tako kot bi moralo: […] a ce razred izpeljem iz …
10:49 Changeset in orange [5833:0098c3e5b42c] by blaz <blaz.zupan@…>
defaultchanges due to changes in the script (shorter runtime)
10:42 Changeset in orange [5832:f9cc86f9ae2d] by blaz <blaz.zupan@…>
defaultminor changes in tree size (hope it stabilizes here)
08:36 Changeset in orange [5831:ce624b9456ad] by blaz <blaz.zupan@…>
default< -> =< and >= -> >
02:38 Ticket #357 (levoklik na canvasu) closed by janez
fixed
02:37 Changeset in orange [5830:b3280a7d0962] by janezd <janez.demsar@…>
default- widget popups now only appear on right click

03/13/09:

18:04 Changeset in orange [5829:e85c41dd8311] by blaz <blaz.zupan@…>
defaulthelp() -> usage()
17:31 Changeset in orange [5828:8dc83a6449aa] by janezd <janez.demsar@…>
default- changed version to 2.0b
17:25 Ticket #358 (Vrstica About v Canvasu) created by blaz
Gregor, lahko prosim vkljucis (na primerno mesto, na Macu je to npr. v …
17:20 Ticket #357 (levoklik na canvasu) created by blaz
Pri nacinu "Canvas Popups" naj levi klik na praznem canvas-u vec ne odpira …
17:12 Changeset in orange [5827:87bd2b5405eb] by blaz <blaz.zupan@…>
defaultminor changes
16:28 Changeset in orange [5826:df7d1cdccdf1] by blaz <blaz.zupan@…>
defaultcommand-line argument handling changed, and so did argument names

03/12/09:

17:59 Changeset in orange [5825:5299bcc71004] by blaz <blaz.zupan@…>
defaultcorrected a few (new) bugs
17:50 Changeset in orange [5824:ef56e92a07ad] by blaz <blaz.zupan@…>
defaultrenamed the folder with results (removed the "-output")
17:42 Changeset in orange [5823:2a0e58325f19] by blaz <blaz.zupan@…>
defaultmoved the files with results to results subdirectory (subdirectory …
14:32 Changeset in orange [5822:ea533518f12d] by gregor <gregor@…>
default
11:11 Changeset in orange [5821:0288e515ec42] by blaz <blaz.zupan@…>
defaultsome numbers changed slightly
11:10 Changeset in orange [5820:1bd2fbfac942] by blaz <blaz.zupan@…>
defaultsome numbers changed slightly
11:09 Changeset in orange [5819:69f63159a4e2] by blaz <blaz.zupan@…>
defaulttree thresholds changed from >= to <= (minor differences)
11:09 Changeset in orange [5818:07f7fbebdb87] by blaz <blaz.zupan@…>
defaultminor changes (in output)

03/11/09:

11:58 Changeset in orange [5817:44193e902c3e] by ales_erjavec <ales.erjavec@…>
default

03/10/09:

21:21 Changeset in orange [5816:8f7345de07ee] by blaz <blaz.zupan@…>
defaultadded a couple of docstrings
15:06 Changeset in orange-bioinformatics [701:55046d233d93] by ales_erjavec <ales.erjavec@…>
default- added focus out to Filter controls
15:04 Changeset in orange [5815:cc95a5c31786] by ales_erjavec <ales.erjavec@…>
default- added DoubleSpinBoxWFocusOut
14:09 Ticket #356 (warning "previous session was not closed successfully" misplaced) created by blaz
Odprem canvas, zlozim eno shemo, shranim, grem vem (ko to naredim me …
10:08 Ticket #354 (GO Enrichment Analysis (Filter)) reopened by blaz
Ales, tole se ne dela dobro. Prosim, za obe polji, uporabi kontrolo ki …

03/09/09:

15:01 Changeset in orange [5814:9fb933523870] by ales_erjavec <ales.erjavec@…>
default- fixed trac ticket #355
12:26 Ticket #354 (GO Enrichment Analysis (Filter)) closed by anonymous
fixed
12:17 Changeset in orange-bioinformatics [700:82373444bcf7] by ales_erjavec <ales.erjavec@…>
default-changed slider controls in filter box to spin boxes
Note: See TracTimeline for information about the timeline view.