Timeline


and

04/25/09:

23:31 Ticket #420 (Bug in File widget) closed by janez
fixed: Urejeno. Je pa grdo: do napake pride zaradi nedokumentirane spremembe v …
23:19 Changeset in orange [6006:57f1df9f736c] by janezd <janez.demsar@…>
default- dictproxy now works in python 2.6
17:57 Ticket #423 (GO selection of terms) created by blaz
(also from Anup) Term selection should be implemented in a more standard …
17:53 Changeset in orange [6005:4897d0b52308] by blaz <blaz.zupan@…>
defaultchanged few labels
17:48 Ticket #422 (GO widget - cluster and reference columns) created by blaz
(anup reports) For cluster and reference frequency columns in GO analysis …
17:37 Ticket #421 (sorting in GO widget) created by blaz
(Anup reports) The columns in the GO enrichment are all treated as …
10:49 Ticket #420 (Bug in File widget) created by anonymous
Testiral na Python 2.6 Če dodam Naive Bayes widget in potem File dela vse …
09:24 Changeset in orange [6004:b84e07694189] by gregor <gregor@…>
default- removed a print
08:30 Changeset in orange [6003:dd71bd654bde] by markotoplak
defaultOWSaveDistanceFile: corrected the description

04/24/09:

21:57 Ticket #419 (prazen hierarhical clustering vrze exception) created by blaz
Hierarchical Clustering (brez vhodnih podatkov) odpres, postavis mis na …
20:53 Changeset in orange [6002:0699be4a515a] by blaz <blaz.zupan@…>
defaultnew classification icons
16:01 Changeset in orange-bioinformatics [837:97c28dbaf594] by ales_erjavec <ales.erjavec@…>
default
15:54 Changeset in orange [6001:82079ac597f4] by miha <miha.stajdohar@…>
default
15:54 Changeset in orange [6000:80a1e56320a0] by miha <miha.stajdohar@…>
default
15:44 Changeset in orange [5999:68b8d8a3aa0b] by ales_erjavec <ales.erjavec@…>
default
14:09 Changeset in orange-bioinformatics [836:bad20612b0ca] by ales_erjavec <ales.erjavec@…>
default- removed cache
13:56 Changeset in orange-bioinformatics [835:021b30b18a51] by ales_erjavec <ales.erjavec@…>
default- fixed data info box
13:24 Changeset in orange-bioinformatics [834:39c0185684bb] by markotoplak
defaultobiKEGG: use special matcher for dicty
13:12 Changeset in orange-bioinformatics [833:d184a01b89d4] by markotoplak
defaultFixed gene info in dicty to work even if packages are not preinstalled.
13:04 Ticket #418 (Gene Info se zrusi ob prvem poganjanju na Dicty podatkih) closed by ales
fixed
13:03 Changeset in orange-bioinformatics [832:219c12d7607e] by ales_erjavec <ales.erjavec@…>
default
12:52 Ticket #418 (Gene Info se zrusi ob prvem poganjanju na Dicty podatkih) created by blaz
In sicer to stori, ce mu manjka dictyBase gene aliases. Ideja je, da …
10:45 Changeset in orange-bioinformatics [831:cae03c6e95f9] by markotoplak
defaultobiDicty: output DDB_G instead of DDB's, small stability improvement.

04/23/09:

17:15 Changeset in orange-bioinformatics [830:db505bde1951] by ales_erjavec <ales.erjavec@…>
default
16:09 Changeset in orange-bioinformatics [829:c7de968b667b] by blaz <blaz.zupan@…>
defaultnow uses .attributes for storing sample type (stores everything into a …
15:49 Changeset in orange [5998:ee6f9d0e1f9f] by blaz <blaz.zupan@…>
defaulthandles attribute labels (.attributes) properly, displays them in …
15:01 Changeset in orange [5997:323da9e0a36d] by blaz <blaz.zupan@…>
defaultnow outputs centroids
14:28 Changeset in orange [5996:4b79c8d63f33] by blaz <blaz.zupan@…>
defaultchanged the order of imports (previous had problems on Mac OS X)
14:11 Changeset in orange [5995:915dbe7c0185] by ales_erjavec <ales.erjavec@…>
default
12:22 Changeset in orange [5994:bdfa663ed902] by gregor <gregor@…>
default- we can now use as the value parameter also a key in a dictionary. In …
12:19 Changeset in orange [5993:d2f085951fdb] by gregor <gregor@…>
default- will contain more advanced gui components
12:18 Changeset in orange [5992:79e0bef169df] by gregor <gregor@…>
default- ported code from orngGui to OWGUI - size of widgets on canvas can be …
11:41 Ticket #417 (razlicni tipi vhodnih podatkov za Gene Selection) created by marko
Ker so ene scoring metode primerne zgolj za uporabo na dveh razredih, je …
11:37 Changeset in orange-bioinformatics [828:edae5d37eb67] by markotoplak
defaultOWFeatureSelection: combo box namesto radio buttonov, manjka disablanje, …
10:47 Changeset in orange [5991:6f29018db262] by Mitar <Mitar@…>
defaultFixed path in a dailybuild script.
10:39 Ticket #416 (obiGO crash) created by lanz
Enrichment analiza se za nekatere gene sesuva (za vecino dela v redu): …
10:38 Changeset in orange-bioinformatics [827:1e824ee4b6b9] by markotoplak
defaultOWFeatureSelection: minor user interface tweak

04/22/09:

23:06 Changeset in orange-bioinformatics [826:f2097032468b] by crt <crtomir.gorup@…>
defaultAdded docstrings.
22:36 Changeset in orange-bioinformatics [825:1f8827c82d53] by crt <crtomir.gorup@…>
defaultAdded docstrings.
16:14 Changeset in orange [5990:3f7e17e2a777] by ales_erjavec <ales.erjavec@…>
default
16:13 Changeset in orange-bioinformatics [824:a4bd72995b8f] by ales_erjavec <ales.erjavec@…>
default- added version to all classes
15:40 Changeset in orange-bioinformatics [823:327f0c58dcbf] by crt <crtomir.gorup@…>
defaulttest
15:19 Changeset in orange [5989:1fadc9438706] by ales_erjavec <ales.erjavec@…>
default
15:18 Changeset in orange [5988:5ad6f304a994] by ales_erjavec <ales.erjavec@…>
default
15:18 Changeset in orange-bioinformatics [822:e7220ca25950] by ales_erjavec <ales.erjavec@…>
default- added version to all classes
11:03 Changeset in orange [5987:c8d1fcb5b7f3] by martin <martin@…>
defaultadded stepwise regression

04/21/09:

22:46 Changeset in orange-bioinformatics [821:d371522d878c] by ales_erjavec <ales.erjavec@…>
default- fixed gene name matching
15:05 Ticket #414 (KEGG winget -> info on genes) closed by ales
fixed
15:05 Changeset in orange-bioinformatics [820:c90a49211751] by ales_erjavec <ales.erjavec@…>
default- added info label
14:27 Ticket #412 (GEO in lokalni data seti) closed by ales
fixed: (se to da naresti enostavno, tako da nastavis barvo v oznaki <font>?). …
14:24 Changeset in orange-bioinformatics [819:46656464cbe0] by ales_erjavec <ales.erjavec@…>
default
14:22 Changeset in orange-bioinformatics [818:53dbe4d57472] by ales_erjavec <ales.erjavec@…>
default- local GDS are colored green
13:40 Ticket #415 (KEGG widget -> Ontology/Annotation Info (Mac OS X)) created by blaz
Na Mac OS X GO widget s pritiskom na gumb Ontology/Annotation Info odpre …
13:37 Changeset in orange [5986:c597f7f6714b] by Mitar <Mitar@…>
defaultStop VMware after autologin fails few times.
13:35 Ticket #414 (KEGG winget -> info on genes) created by blaz
Tako kot GO widget naj tudi KEGG cisto zgoraj levo dobi "Info" box, kjer …
13:32 Changeset in orange-bioinformatics [817:38a4e1d9ee6a] by ales_erjavec <ales.erjavec@…>
default- removed documentation for GOLib
13:26 Ticket #413 (Feature selection (bioinformatics) - Score Method) created by blaz
Score Method zavzame prevec prostora (radio buttons), spremeni …
13:24 Changeset in orange-bioinformatics [816:c168c545d6f7] by blaz <blaz.zupan@…>
defaultchanged some labels (to gene, sample, ...)
13:07 Ticket #412 (GEO in lokalni data seti) created by blaz
GEO widget naj v razicni barvi fontov izpisuje data sete ki so in ki niso …
12:56 Changeset in orange-bioinformatics [815:1e6ccc65bbb6] by markotoplak
defaultobiGene: added explain() functions to gene matchers. matcher which doest …
11:54 Ticket #411 (GEO ne izpisuje informacij o data setu) created by blaz
Odprem widget GEO Data sets, v filter vpisem cancer, cliknem Features …

04/20/09:

17:38 Changeset in orange-bioinformatics [814:15238f67fb51] by ales_erjavec <ales.erjavec@…>
default- Essential organisms always present in organism combo box
16:30 Changeset in orange-bioinformatics [813:f60daaa12086] by ales_erjavec <ales.erjavec@…>
default
16:30 Changeset in orange [5985:fdbbe039ed38] by ales_erjavec <ales.erjavec@…>
default- added update_by_tags function
16:29 Changeset in orange-bioinformatics [812:087df3c8dfb9] by ales_erjavec <ales.erjavec@…>
default- added update_by_tags call
15:49 Changeset in orange-bioinformatics [811:9a4f4f2118f6] by ales_erjavec <ales.erjavec@…>
default- Essential organisms always present in organism combo box
14:58 Changeset in orange [5984:34660400247e] by Mitar <Mitar@…>
defaultAdded PIL library.
14:26 Changeset in orange-bioinformatics [810:1d220045088e] by ales_erjavec <ales.erjavec@…>
default- Essential organisms always present in organism combo box
13:59 Changeset in orange-bioinformatics [809:0f088f2b8821] by tomazc <tomaz.curk@…>
default
13:18 Changeset in orange-bioinformatics [808:524c6fe5053e] by tomazc <tomaz.curk@…>
default
13:06 Changeset in orange-bioinformatics [807:80cc404a43af] by tomazc <tomaz.curk@…>
defaultpartially corrected
12:37 Changeset in orange-bioinformatics [806:56bd6af644d5] by ales_erjavec <ales.erjavec@…>
default
12:36 Changeset in orange-bioinformatics [805:78e60d4a37c9] by ales_erjavec <ales.erjavec@…>
default
12:02 Changeset in orange [5983:52f02226aaf9] by tomazc <tomaz.curk@…>
defaultPIL is now part of the core installation
11:31 Changeset in orange [5982:7ac4ae81a1de] by Mitar <Mitar@…>
defaultAdded optional only bundle building.
10:46 Changeset in orange [5981:8bf93c041325] by ales_erjavec <ales.erjavec@…>
default-added verbose argument to SVMLearner
10:41 Changeset in orange [5980:77382a1872c6] by ales_erjavec <ales.erjavec@…>
default-added verbose argument to SVMLearner
10:16 Changeset in orange [5979:a6e7c41cb6fa] by gregor <gregor@…>
default
07:46 Ticket #410 (KEGG widget na Mac OS X Boundle pade (PIL ni vkljucen v distribucijo)) created by blaz
Lahko v distribucijo za Maca vkljucis tudi PIL, brez njega ne dela KEGG …

04/19/09:

21:52 Ticket #405 (sveza instalacija na Mac OS X, GO widget, se zrusi) closed by ales
fixed
18:52 Ticket #409 (na novi instalaciji Mac OS X GO ne deluje tudi ce ima taxonomijo) closed by ales
fixed
18:51 Changeset in orange-bioinformatics [804:19b34f498249] by ales_erjavec <ales.erjavec@…>
default

04/18/09:

21:30 Changeset in orange-bioinformatics [803:d2f51dc6d987] by ales_erjavec <ales.erjavec@…>
default- fixed infinite recursion due to a cycle in the ontology
11:06 Ticket #409 (na novi instalaciji Mac OS X GO ne deluje tudi ce ima taxonomijo) created by blaz
Prvi problem pri novi instalaciji je, da GO widget crkne, ker ni …
11:00 Ticket #408 (GO strezniska skripta ne deluje pravilno) created by blaz
Ne uposteva nastavitve organizmov v orngTaxonomy (npr. nekateri essential …
10:58 Ticket #407 (KEGG server file update script) created by blaz
Na strezniku je pri KEGG-u kup datotek za organizme, ki niso na common …
10:55 Ticket #406 (na svezi instalaciji se zrusi KEGG) created by blaz
KEGG widget se na svezi instalaciji zrusi (dal sem mu "brown selected", …
10:46 Ticket #405 (sveza instalacija na Mac OS X, GO widget, se zrusi) created by blaz
Testiraj instalacije tako, da ne nalozis nobenih genomskih podatkov! Sam …
10:40 Ticket #404 (privzeti Look style na Mac OS X) created by blaz
Privzeti looks style na Mac OS X naj bo Cleanlooks, saj Macintosh (Aqua) …

04/17/09:

15:19 Changeset in orange-bioinformatics [802:4babd583d950] by ales_erjavec <ales.erjavec@…>
default
12:43 Changeset in orange-bioinformatics [801:f782d5bbeb32] by ales_erjavec <ales.erjavec@…>
default- added Significance test options
08:57 Changeset in orange-bioinformatics [800:eae51546cb58] by tomazc <tomaz.curk@…>
defaultcalling of update after install had to be removed due to problems with the …

04/16/09:

20:25 Changeset in orange [5978:a45a6a436ce4] by blaz <blaz.zupan@…>
defaultmoved to prototypes
20:18 Changeset in orange [5977:452fbd4962b9] by blaz <blaz.zupan@…>
defaultremoved (moved to prototypes)
20:17 Changeset in orange [5976:67b9e371671c] by blaz <blaz.zupan@…>
defaultnew set of icons for visualization widgets
19:59 Changeset in orange [5975:981b55995423] by blaz <blaz.zupan@…>
defaultmoved from Visualize
18:30 Changeset in orange [5974:58b01334249f] by gregor <gregor@…>
default- fixed progressbar
15:21 Changeset in orange-bioinformatics [799:50911269f439] by ales_erjavec <ales.erjavec@…>
default- added Report
12:26 Changeset in orange-bioinformatics [798:df82e0828350] by ales_erjavec <ales.erjavec@…>
default- using obiGene genemantcher in obiKEGG
11:41 Ticket #403 (GO Enrichment Analysis -> Report) created by blaz
Ales, prosim implementiraj "Report" v GO widgetu. Izpise naj oboje, drevo …

04/15/09:

13:42 Changeset in orange [5973:1dc54d0e0fb1] by ales_erjavec <ales.erjavec@…>
default- updated svm to use libsvm version 2.89
10:54 Changeset in orange-bioinformatics [797:ba8c47c5b6a2] by ales_erjavec <ales.erjavec@…>
default
09:47 Changeset in orange [5972:8c96941e39ef] by gregor <gregor@…>
default- bug fix. freeviz classifier now works also in case of missing values
09:07 Changeset in orange-bioinformatics [796:0adf8dfb2771] by markotoplak
defaultOWDicty: buffering, clear buffer option added.
08:52 Changeset in orange-bioinformatics [795:338b7fc6500a] by markotoplak
defaultOWDicty: single table output.

04/14/09:

23:03 Ticket #402 (Variable.attributes naj se pojavi, ko ga prvic uporabis) closed by janez
fixed
23:00 Changeset in orange [5971:588a4581de99] by janezd <janez.demsar@…>
default- Variable.attributes now appears at the first use
15:19 Changeset in orange-bioinformatics [794:e619d4d2fed0] by markotoplak
defaultobiDicty: Added saving of annotations of indiviual examples to attribute …
14:39 Changeset in orange [5970:47bcc50fea4b] by gregor <gregor@…>
default- fixed Freeviz classifier so that it now works with discrete attributes
13:47 Changeset in orange-bioinformatics [793:034a82d3538b] by markotoplak
defaultobiDicty: buffer is now content sensitive
12:26 Changeset in orange-bioinformatics [792:386d85809cba] by markotoplak
defaultobiDicty: added buffer clearing option
11:39 Changeset in orange-bioinformatics [791:82bc064c1d73] by ales_erjavec <ales.erjavec@…>
default- using obiGene.matcher
11:19 Ticket #402 (Variable.attributes naj se pojavi, ko ga prvic uporabis) created by janez
Naj bo videti, kot da je ves cas obstajal (ceprav ni).
10:58 Ticket #401 (gene info naj prikaže tudi ime gena v datasetu) created by marko
Sedaj gene info widget ob prikazinih genih ne pokaže, za katero ime na …

04/13/09:

17:38 Changeset in orange [5969:8fca98e2c5f4] by gregor <gregor@…>
default- bug fix: FreevizClassifier. We have to call …
11:16 Changeset in orange [5968:56f520f936e5] by janezd <janez.demsar@…>
default- fixed another int -> Py_ssize_t

04/12/09:

09:24 Ticket #400 (progress bar nad ikonami zginil) created by blaz
Z zadnjimi spremembami (nove ikone) je izginil progress bar nad ikonami …

04/10/09:

17:05 Changeset in orange [5967:ff0b2351741e] by gregor <gregor@…>
default- bug fix. missing values for continuous variables now work again
14:20 Changeset in orange [5966:847339fb57dd] by gregor <gregor@…>
default
14:19 Changeset in orange [5965:ccb12bb10702] by gregor <gregor@…>
default- in case the new icons exist we use them, otherwise the old icons
14:17 Changeset in orange [5964:bc079e379e84] by gregor <gregor@…>
default- in case the new icons exist we use them, otherwise the old icons
11:47 Changeset in orange-bioinformatics [790:a758aee66f1c] by ales_erjavec <ales.erjavec@…>
default- fixed a bug with tool tips in mouse move event
11:32 Changeset in orange [5963:095f748cb9cc] by blaz <blaz.zupan@…>
defaultlabels for distance methods corrected ("Rank")
11:20 Changeset in orange [5962:7281d7f05e72] by blaz <blaz.zupan@…>
defaultlabels for distance methods corrected ("Rank")
11:19 Changeset in orange [5961:1f178913b31a] by blaz <blaz.zupan@…>
defaulttwo correlation measures changed (if exception, distance is 1.0)

04/09/09:

14:38 Changeset in orange [5960:5dfd8474732a] by miha <miha.stajdohar@…>
defaultname components by molecular functions also
13:19 Changeset in orange [5959:b1815f664056] by miha <miha.stajdohar@…>
defaultfixed rank

04/08/09:

21:58 Changeset in orange [5958:90f065622b7c] by janezd <janez.demsar@…>
default- fixed a bug in saving attributes' attributes
21:50 Changeset in orange [5957:9a74dfaf9b04] by janezd <janez.demsar@…>
default- attributes of attributes (from the third line of .tab file) are now in …
14:32 Changeset in orange [5956:8876698df79b] by gregor <gregor@…>
default- sizes of the cells should be now appropriate also in case of float vals
13:45 Changeset in orange-bioinformatics [789:e2f6ba4ff7b2] by ales_erjavec <ales.erjavec@…>
default
13:37 Changeset in orange [5955:616fe92e7602] by gregor <gregor@…>
default- when connecting to test learners it will no longer create the support …
13:30 Ticket #399 (test learners ne pokaze kateri performance scori so dejansko aktivni) created by gregor
Ce das na canvas test learners widget in ga odpres ne bo v seznamu …
13:30 Changeset in orange-bioinformatics [788:cb6e303e14e7] by ales_erjavec <ales.erjavec@…>
default- updated obiGO documentation
13:23 Changeset in orange [5954:223e31aba5d4] by gregor <gregor@…>
default- pressing enter in the dialog will no longer open the Report dialog
12:45 Changeset in orange [5953:e2d1d9ed7a60] by ales_erjavec <ales.erjavec@…>
default- added updateNCBI_geneinfo
12:41 Ticket #388 (tags for NCBI gene) closed by ales
fixed
12:37 Changeset in orange [5952:1959f5889be3] by ales_erjavec <ales.erjavec@…>
default
12:23 Changeset in orange-bioinformatics [787:46ea3ceb85e0] by ales_erjavec <ales.erjavec@…>
default
12:08 Ticket #376 (ponavljanje stetja (progress bar) v HeatMap pri clustering with sorting) closed by ales
fixed: Potrebno updatati tudi orngClustering
12:07 Ticket #382 (heatmap crash when clustering) closed by ales
fixed
12:06 Changeset in orange-bioinformatics [786:13cb4f0630fe] by ales_erjavec <ales.erjavec@…>
default- fixed kernel RTTI exception, - better progress bar updates
12:05 Changeset in orange [5951:ef65ed5c54cf] by ales_erjavec <ales.erjavec@…>
default
12:02 Changeset in orange [5950:0a674f88ff59] by miha <miha.stajdohar@…>
default
11:46 Changeset in orange [5949:f5adbd89b10b] by ales_erjavec <ales.erjavec@…>
default
10:40 Changeset in orange [5948:b26548d2305d] by ales_erjavec <ales.erjavec@…>
default
09:01 Ticket #398 (test learners vrne math error) created by gregor
Test learners mi vrne exception: Unhandled exception of type ValueError …
08:33 Changeset in orange-bioinformatics [785:205f6608315f] by markotoplak
defaultobiGene: removed one print statement
08:11 Changeset in orange-bioinformatics [784:2be9f533ebf1] by markotoplak
defaultobiGene, obiTaxonomy: now it finds correct dicty

04/07/09:

20:39 Changeset in orange-bioinformatics [783:fb28d62b654b] by markotoplak
defaultNCBIGene: added special exception for dicty.
19:52 Changeset in orange-bioinformatics [782:5316aaef1676] by markotoplak
defaultNCBIGene info uses new gene matcher
15:34 Changeset in orange [5947:5dc664094ef3] by miha <miha.stajdohar@…>
default
13:09 Changeset in orange [5946:9adc69d163e9] by miha <miha.stajdohar@…>
defaultname components with GO terms
13:01 Changeset in orange-bioinformatics [781:1ba0741f816d] by markotoplak
defaultobiGene: tried to translate NCBI to new gene matcher (commented out for …
12:09 Changeset in orange [5945:a9ff2e3cdea4] by markotoplak
defaultorngServerFiles: added localpath_download
10:57 Changeset in orange-bioinformatics [780:b09d573af555] by markotoplak
defaultobiGene: preparing NCBI gene matcher
10:01 Changeset in orange-bioinformatics [779:b7f5c282b7d9] by markotoplak
defaultobiGene: dicty matching added.
09:37 Changeset in orange-bioinformatics [778:6b71afd4089e] by markotoplak
defaultwidgets/OWUpdateGenomicsDatabases.py: added dictybase support.
09:35 Changeset in orange-bioinformatics [777:14c0ba576d68] by markotoplak
defaultworked on matcher on dictybase
09:21 Changeset in orange [5944:49517a582c94] by markotoplak
defaultscripts building server files: added obiDictyBase

04/06/09:

19:53 Ticket #397 (GEO data sets - filtiranje po ID) closed by ales
fixed
19:53 Changeset in orange-bioinformatics [776:6e83bfd1a083] by ales_erjavec <ales.erjavec@…>
default
16:59 Ticket #397 (GEO data sets - filtiranje po ID) created by marko
Ce v vnosno polje "filter" napises direktno ID, ne najde nicesar. Fino bi …
16:19 Changeset in orange-bioinformatics [775:2e38a9e730c8] by markotoplak
defaultobiGene: case sensitive / insensitive property of gene matchers added.
13:12 Changeset in orange [5943:5498e0af5458] by ales_erjavec <ales.erjavec@…>
default
13:03 Ticket #396 (gene selection widget previsok) created by marko
Gene selection widget je previsok (ne paše na ločljivost 1024x768 v …
12:32 Changeset in orange [5942:64bd3ae5171b] by markotoplak
defaultorngClustering: obejct -> object when importing if no matplotlib present.
11:47 Changeset in orange-bioinformatics [774:6d0de5163a11] by ales_erjavec <ales.erjavec@…>
default- added obiGene, obiGEO
11:33 Changeset in orange [5941:bde705272dbb] by Mitar <Mitar@…>
defaultChanged program arguments of Fink selfupdate command.

04/05/09:

20:28 Ticket #395 (GSEA progress bar) closed by marko
invalid: Ze leto dni je not. Tudi verzija iz SVN ga ima (testiraj pravkar). Ce se …
17:25 Changeset in orange-bioinformatics [773:65ccd79124d6] by ales_erjavec <ales.erjavec@…>
default
17:04 Changeset in orange-bioinformatics [772:42f55196fca4] by ales_erjavec <ales.erjavec@…>
default
16:27 Ticket #395 (GSEA progress bar) created by blaz
marko, naredis en progress bar pri GSEA widgetu (vcasih dolgo traja, pa je …
15:34 Changeset in orange-bioinformatics [771:d666c0bad0f4] by ales_erjavec <ales.erjavec@…>
default
14:39 Ticket #383 (manjse spremembe v GO Enrichment Analysis widgetu) closed by ales
fixed
14:39 Changeset in orange-bioinformatics [770:001a7762b686] by ales_erjavec <ales.erjavec@…>
default- GUI changes
13:59 Ticket #386 (spremembe v Feature Selection (bioinformatics)) closed by ales
fixed
13:53 Ticket #391 (Vulcano Plot in podatki z geni v vrsticah) closed by ales
fixed
13:52 Changeset in orange-bioinformatics [769:c4f984c7800d] by ales_erjavec <ales.erjavec@…>
default- - using obiGEO.transpose
13:42 Ticket #389 (HeatMap rows to edit box) closed by anonymous
fixed
13:41 Changeset in orange-bioinformatics [768:e8fd4d1d43e6] by ales_erjavec <ales.erjavec@…>
default
13:33 Ticket #387 (Gene Info crashes when there is no NCBI gene info on the local disk) closed by anonymous
fixed
13:09 Ticket #394 (Feature selection widget naj pri izboru primerov nujno ohrani meta ...) closed by anonymous
fixed
13:05 Changeset in orange-bioinformatics [767:4be2f070ebe0] by ales_erjavec <ales.erjavec@…>
default- meta attribute handling
12:53 Ticket #394 (Feature selection widget naj pri izboru primerov nujno ohrani meta ...) created by blaz
Sedanji widget jih ne ohranja (probaj npr. z brown-selected.tab, kjer se …
12:29 Changeset in orange [5940:54238542d5af] by blaz <blaz.zupan@…>
defaultrewrote, new interface, now works with orngClustering and is way faster …
12:29 Changeset in orange [5939:065fd7d0809c] by blaz <blaz.zupan@…>
defaultadded spearman and pearson for example distance (the distance scoring code …
12:28 Changeset in orange [5938:0f16cccb65de] by blaz <blaz.zupan@…>
defaultadded spearman and pearson for example distance
12:20 Changeset in orange [5937:0ea5b4b798a9] by blaz <blaz.zupan@…>
defaultnew icons (no border)
12:14 Ticket #393 (Gene Info pocasen?) created by blaz
Gene Info porabi kaksnih pet sekund, cetudi mu dam na vhod samo nekaj …
12:11 Ticket #392 (Gene Info ne prikaze zadnjega NCBI ID) created by blaz
Ce menjas podatke, ki gredo v Gene Info, se za zadnji gen v tabeli NCBI ID …
11:33 Changeset in orange-bioinformatics [766:0907eb4406a9] by ales_erjavec <ales.erjavec@…>
default- tree widget speedup
10:56 Ticket #390 (Feature selection widget) closed by anonymous
fixed: You need to update orange/OrangeWidgets/OWHist.py for a fix.
00:41 Changeset in orange-bioinformatics [765:2b77e2decc09] by blaz <blaz.zupan@…>
defaultinitial commit of new icon
00:40 Changeset in orange-bioinformatics [764:d93bf7105429] by blaz <blaz.zupan@…>
defaultChanged icons and descdriptions.
00:39 Ticket #391 (Vulcano Plot in podatki z geni v vrsticah) created by blaz
Ales, ali lahko prosim se Vulcano Plot prilagodis tako, kot si FSS widget …

04/04/09:

23:25 Ticket #390 (Feature selection widget) created by blaz
Moving a pointer (mouse) over the empty histogram (no data in the widget): …
22:12 Changeset in orange [5936:406ff99adb6e] by ales_erjavec <ales.erjavec@…>
default
21:53 Changeset in orange-bioinformatics [763:74fd4589436c] by ales_erjavec <ales.erjavec@…>
default- using obiGEO.transpose
21:53 Changeset in orange-bioinformatics [762:549c7ed9a784] by ales_erjavec <ales.erjavec@…>
default
21:30 Ticket #389 (HeatMap rows to edit box) created by blaz
Ali lahko prosim v HeatMap Merge->Rows zamenjas slider z entry box (tisti, …
21:05 Changeset in orange [5935:40d3c0d96e30] by blaz <blaz.zupan@…>
defaultadded display of variable attributes (for now just for "group")
19:46 Changeset in orange-bioinformatics [761:dc742401f91b] by blaz <blaz.zupan@…>
defaultlabels attributes with sample id ("group" attribute)
19:17 Changeset in orange-bioinformatics [760:49adc34ae028] by blaz <blaz.zupan@…>
defaultadded transpose(data)
17:45 Ticket #388 (tags for NCBI gene) created by blaz
Tags for "NCBI gene info" files should include the name of the organism. …
17:40 Ticket #387 (Gene Info crashes when there is no NCBI gene info on the local disk) created by blaz
[…]

04/03/09:

22:29 Ticket #381 (Dodatni atributi atributa v tretji vrstici .tab) closed by janez
fixed
22:20 Changeset in orange [5934:47bf8adf8e01] by janezd <janez.demsar@…>
default- tab delimited files can now have extra flags (name=value) which get …
21:06 Changeset in orange-bioinformatics [759:b951e540c3a8] by ales_erjavec <ales.erjavec@…>
default
20:44 Changeset in orange [5933:507afa7c0892] by ales_erjavec <ales.erjavec@…>
default
15:35 Changeset in orange-bioinformatics [758:e2cf35088f30] by ales_erjavec <ales.erjavec@…>
default- added null distribution computation - added threshold spin boxes
15:33 Changeset in orange [5932:b6ae0efb28d5] by ales_erjavec <ales.erjavec@…>
default
11:25 Changeset in orange-bioinformatics [757:4cb4ebead672] by markotoplak
defaultobiGene: case (in)sensitivity
10:05 Changeset in orange-bioinformatics [756:b3c7bc829d01] by markotoplak
defaultobiGene: minor modifications, testing.

04/02/09:

20:51 Changeset in orange-bioinformatics [755:b06bd4978f12] by markotoplak
defaultobiGene: changed comments.
14:43 Changeset in orange-bioinformatics [754:58308d394433] by ales_erjavec <ales.erjavec@…>
default- added progress bar
14:33 Ticket #386 (spremembe v Feature Selection (bioinformatics)) created by blaz
1) When cursor is over (or close to) any of the bars that change the …
13:47 Changeset in orange-bioinformatics [753:897c16ae0b14] by ales_erjavec <ales.erjavec@…>
default- added cached organism search to obiTaxonomy, obiKEGG and obiGO for use …
13:16 Changeset in orange-bioinformatics [752:eff03811e0f4] by blaz <blaz.zupan@…>
defaultminor corrections (change of name)
11:15 Changeset in orange [5931:68d4ec31a662] by miha <miha.stajdohar@…>
defaultchanged newVar.values = bound[0].values[:] to newVar.values = …
11:14 Ticket #385 (StringList se cudno obnasa na Ubuntu 64bit) created by miha
ne dela: newVar.values = bound[0].values[:] dela: newVar.values = …
11:13 Ticket #384 (Prosim, ce lahko preveris, kako je z normalizacijo reliefFa v Orange-u.) created by lan
10:43 Changeset in orange [5930:aa96e758991e] by Mitar <Mitar@…>
defaultBugfixed daily VMware script.

04/01/09:

23:09 Changeset in orange-bioinformatics [751:4e1a86a3a611] by markotoplak
defaultobiGene: comments added for gene matcher.
23:08 Changeset in orange [5929:1c7a23a319fc] by janezd <janez.demsar@…>
default- fixed a typo
17:03 Ticket #369 (to_taxid v obiTaxonomy vraca set) closed by ales
fixed: Sem popravil v dokumentaciji
17:00 Changeset in orange-bioinformatics [750:156878a7fe11] by ales_erjavec <ales.erjavec@…>
default
16:42 Ticket #375 (HeatMap crash pri reload podatkov) closed by ales
fixed
16:42 Changeset in orange-bioinformatics [749:99c309cde4ec] by ales_erjavec <ales.erjavec@…>
default- fixed exception on data reload (trac ticket #375)
16:39 Ticket #383 (manjse spremembe v GO Enrichment Analysis widgetu) created by blaz
V Input naj bo cisto zgoraj skatla "Info" z dvemi vrsticami: XXX genes on …
16:28 Changeset in orange-bioinformatics [748:8b358921d75d] by ales_erjavec <ales.erjavec@…>
default
16:01 Changeset in orange [5928:e395135d60a6] by miha <miha.stajdohar@…>
defaultfixed function min error on linux
15:43 Ticket #382 (heatmap crash when clustering) created by blaz
Take GEO Datasets, take gds1049, with Genes in the row (Genes or spots + …
15:36 Ticket #372 (Gene Info widget) closed by ales
fixed
15:35 Ticket #371 (provide access to ncbi gene info, add to obiGene.py) closed by ales
fixed
12:33 Changeset in orange [5927:1e324ff69b46] by Mitar <Mitar@…>
defaultSmall improvements to daily VMware script.
12:28 Changeset in orange [5926:85049688b170] by Mitar <Mitar@…>
defaultAdded newline at the end of the script (strange Eclipse).
12:27 Changeset in orange [5925:446d49452fb3] by Mitar <Mitar@…>
defaultMade daily VMware script more robust to Mac OS X autologin failures (which …
12:05 Ticket #381 (Dodatni atributi atributa v tretji vrstici .tab) created by janez
Blaz Zupan: > Bi se dalo atributom v Orange-u v tab datoteki pripeti se …
10:38 Changeset in orange-bioinformatics [747:c831e7898a16] by markotoplak
defaultobiGene: added helper function for building of gene matchers
09:21 Changeset in orange-bioinformatics [746:b09a1e333677] by markotoplak
defaultobiGene: added direct matcher.
00:56 Changeset in orange [5924:de5f0499f036] by martin <martin@…>
default
00:54 Changeset in orange [5923:f6ac7f74cb24] by martin <martin@…>
defaultChanges to rule learning.
00:53 Changeset in orange [5922:8c32d454e870] by martin <martin@…>
default

03/31/09:

22:19 Changeset in orange-bioinformatics [745:fd17842846a4] by ales_erjavec <ales.erjavec@…>
default- added organism_name_search methods
21:25 Changeset in orange-bioinformatics [744:99df932307cb] by ales_erjavec <ales.erjavec@…>
default- better unicode handling (ignore errors)
21:00 Changeset in orange-bioinformatics [743:daebcbd1e68f] by ales_erjavec <ales.erjavec@…>
default- fixed unicode filterString problem
20:25 Changeset in orange-bioinformatics [742:ef9f82853908] by ales_erjavec <ales.erjavec@…>
default- added GEO domain
16:36 Changeset in orange-bioinformatics [741:859d0dcf6002] by ales_erjavec <ales.erjavec@…>
default- added table sorting
16:01 Changeset in orange-bioinformatics [740:dccfd4ba7c38] by blaz <blaz.zupan@…>
defaultcorrection of several bugs (data -> gdsdata, ...)
15:53 Changeset in orange-bioinformatics [739:1f111406398f] by ales_erjavec <ales.erjavec@…>
default- added Samples column, pubmed links
15:26 Changeset in orange-bioinformatics [738:879e5a6c4f65] by ales_erjavec <ales.erjavec@…>
default
15:26 Changeset in orange-bioinformatics [737:94a7d66ec290] by ales_erjavec <ales.erjavec@…>
default- bug fixes
14:43 Ticket #380 (Gene Info crashes on change of the organism) closed by anonymous
fixed
14:41 Changeset in orange-bioinformatics [736:c1b3a7ef58a4] by ales_erjavec <ales.erjavec@…>
default- bug fixes
14:26 Ticket #380 (Gene Info crashes on change of the organism) created by blaz
With an empty Gene Info (no data in) I change the organism from Mus …
09:46 Changeset in orange-bioinformatics [735:16a301c96cd4] by blaz <blaz.zupan@…>
defaultminor corrections, also changed some names of class methods

03/30/09:

22:28 Changeset in orange-bioinformatics [734:3952d4d23196] by markotoplak
defaultobiGene: added gene matcher, development version
15:47 Changeset in orange-bioinformatics [733:cd518be55541] by blaz <blaz.zupan@…>
defaultGene Expression Omnibus module, currently implements access to data sets …
15:38 Changeset in orange [5921:65666e868c87] by miha <miha.stajdohar@…>
default
15:36 Changeset in orange [5920:2c0ef7d4a31f] by miha <miha.stajdohar@…>
defaultdocstring corrections
15:33 Changeset in orange [5919:e14e14d33c52] by miha <miha.stajdohar@…>
default
15:29 Changeset in orange [5918:99da723b868b] by miha <miha.stajdohar@…>
default
15:25 Changeset in orange [5917:0e46aa0de75a] by miha <miha.stajdohar@…>
default
15:25 Changeset in orange [5916:c3ddb3c9bd47] by miha <miha.stajdohar@…>
default
15:25 Changeset in orange [5915:3e902892feae] by miha <miha.stajdohar@…>
default
15:06 Changeset in orange [5914:b56c4c1dc375] by miha <miha.stajdohar@…>
default
14:49 Changeset in orange [5913:1c49418f0e24] by miha <miha.stajdohar@…>
defaultnew way for reading network
14:43 Changeset in orange [5912:14e5f67ad5b4] by miha <miha.stajdohar@…>
default
14:43 Changeset in orange [5911:ad94a2c32058] by miha <miha.stajdohar@…>
default
14:40 Changeset in orange [5910:05c86db317f6] by miha <miha.stajdohar@…>
defaultnetwork can now be initialized without any arguments
13:06 Changeset in orange [5909:44b3f73afc03] by miha <miha.stajdohar@…>
defaultreadNetwork / writeNetwork is now part of orngNetwork.Network class
12:56 Changeset in orange-bioinformatics [732:57759a2b06ab] by ales_erjavec <ales.erjavec@…>
default
11:35 Changeset in orange [5908:1c2e5a208146] by miha <miha.stajdohar@…>
default
11:33 Changeset in orange [5907:42ae29643f27] by miha <miha.stajdohar@…>
default
11:33 Changeset in orange [5906:58fc270b3463] by miha <miha.stajdohar@…>
default
11:32 Changeset in orange [5905:83d970048d02] by miha <miha.stajdohar@…>
defaultNetwork should now be included from orngNetwork

03/29/09:

20:58 Changeset in orange [5904:e094e09031d1] by miha <miha.stajdohar@…>
defaultpredicting widgets on right click on canvas
20:28 Changeset in orange [5903:3269f680e745] by miha <miha.stajdohar@…>
defaultlogging addLink events

03/28/09:

23:01 Changeset in orange [5902:35c2eb97f760] by janezd <janez.demsar@…>
default- fixed a memory leak (PyList_Append does not steal references!)
22:58 Ticket #378 (memory leak in native()) closed by janez
fixed: Tega pa ze dolgo nismo imeli. ;)
22:57 Changeset in orange [5901:288353961a93] by janezd <janez.demsar@…>
default- fixed a memory leak in Example.native (obviously somebody, that is, me, …
13:03 Changeset in orange [5900:25924f0e8b0c] by blaz <blaz.zupan@…>
defaultcrashed for tiny files (speed=0, division by zero). corrected.
11:45 Ticket #379 (Category name blank) created by anonymous
When I add new category (Bioinformatics) through Canvas Options -> Widget …
08:50 Changeset in orange [5899:486deccb5586] by blaz <blaz.zupan@…>
defaultadded update and needs_update
08:49 Changeset in orange [5898:e1db371ab558] by blaz <blaz.zupan@…>
defaultadded update and needs_update
08:48 Changeset in orange [5897:9ea6bed02f54] by blaz <blaz.zupan@…>
defaultregression test script for orngServerFiles. Checks single file update.

03/27/09:

17:15 Changeset in orange [5896:6b6f41703ad0] by blaz <blaz.zupan@…>
defaultadded two more functions (remove local file and module)
17:14 Changeset in orange [5895:5947da52bf25] by blaz <blaz.zupan@…>
defaultadded two more functions (remove local file and module)
17:13 Changeset in orange [5894:2dd205051aea] by blaz <blaz.zupan@…>
defaulta regression test script for orngServerFiles, initial commit
17:13 Changeset in orange [5893:178146d380fc] by blaz <blaz.zupan@…>
defaulta regression test script for orngServerFiles, initial commit
14:44 Changeset in orange-bioinformatics [731:6b71b0f1f79e] by ales_erjavec <ales.erjavec@…>
default- fixed table widget selection
14:43 Changeset in orange-bioinformatics [730:9c6a019d1459] by ales_erjavec <ales.erjavec@…>
default

03/26/09:

15:58 Changeset in orange-bioinformatics [729:38c7f125f2dc] by ales_erjavec <ales.erjavec@…>
default
15:10 Changeset in orange [5892:a5667fd20f52] by miha <miha.stajdohar@…>
defaultremoved replace ' ' with (not needed)
14:54 Changeset in orange-bioinformatics [728:66a6fba38eeb] by ales_erjavec <ales.erjavec@…>
default
14:53 Changeset in orange-bioinformatics [727:76b9c575a315] by ales_erjavec <ales.erjavec@…>
default
13:32 Changeset in orange-bioinformatics [726:0f6271d653dc] by ales_erjavec <ales.erjavec@…>
default-fixed gene name translator
13:15 Ticket #327 (test mailov) closed by anonymous
fixed: Janez je nastavil mail server na "ns.fri.uni-lj.si".
11:08 Changeset in orange-bioinformatics [725:b39d4933ce83] by ales_erjavec <ales.erjavec@…>
default
09:12 Changeset in orange-bioinformatics [724:0bb163c74df3] by tomazc <tomaz.curk@…>
default
08:02 Changeset in orange-bioinformatics [723:f233034da297] by blaz <blaz.zupan@…>
defaultcentered column labels, increased max column width
07:58 Changeset in orange [5891:1fb5a24df3cf] by blaz <blaz.zupan@…>
default<a name="XX"/> -> <a name="XX"></a> (previous version failed to work in …
Note: See TracTimeline for information about the timeline view.