Timeline


and

06/07/13:

15:54 Changeset in orange-bioinformatics [1817:157e69dfa030] by Flashpoint <vid.flashpoint@…>
defaultThe opened files are now directly imported as custom genesets in …
15:17 Changeset in orange-bioinformatics [1816:1ddb05ba025a] by Flashpoint <vid.flashpoint@…>
defaultChanged the hierarchy name of Custom gene sets in obiGeneSets.py. Moved …

06/06/13:

13:50 Changeset in orange-bioinformatics [1815:cbaee4a39a94] by Flashpoint <vid.flashpoint@…>
defaultThe OWCustomSets.py widget's preview pane has been improved to show a …
12:58 Changeset in orange-bioinformatics [1814:c7d693f650af] by Flashpoint <vid.flashpoint@…>
defaultAdded a genesets statistics function to obiGeneSets.py. Added additional …
11:24 Changeset in orange-bioinformatics [1813:c4f8bb01af16] by Flashpoint <vid.flashpoint@…>
defaultRemoved the .pyc files from the commit
11:22 Changeset in orange-bioinformatics [1812:6871643ec38f] by Flashpoint <vid.flashpoint@…>
defaultCustom genesets now use Custom Genesets hierarchy in obiGeneSets.py. …
09:07 Changeset in orange-bioinformatics [1811:d89e4d232162] by Flashpoint <vid.flashpoint@…>
defaultMerged biolab/orange-bioinformatics into default

06/05/13:

20:29 Ticket #1312 (Add HDF5 file support to Orange) created by echlebek
 HDF5 is used by many organizations for …
20:18 Ticket #1311 (Execute a saved scheme headlessly) created by echlebek
It would be useful to execute a saved scheme without loading it into the …
01:45 Changeset in orange [11591:05936ca5105f] by astaric
defaultImproved regression test.
01:44 Changeset in orange [11590:a14e130116b1] by astaric
defaultOnly include PCA in drawing methods.
01:31 Changeset in orange [11589:b131d70679e8] by astaric
defaultUpdated instructions for running tests.
01:30 Changeset in orange [11588:52080269fddb] by astaric
defaultDisabled test for c45.

06/04/13:

20:37 Changeset in orange [11587:fd03cbe41685] by janezd <janez.demsar@…>
defaultFixes in documentation for writing interfaces between C++ and Python
11:18 Changeset in orange [11586:5ba051127aac] by markotoplak
defaultDiscretization uses the correct module for discretization classes.
10:59 Changeset in orange [11585:b87da28cca2c] by markotoplak
defaultUpdated discretization classes in fix_changed_names.
10:58 Changeset in orange [11584:8763e1517159] by markotoplak
defaultRemoved discretization classes from data/discretization (they should be in …
10:57 Changeset in orange [11583:2e6ab05e7fed] by markotoplak
defaultCode indentation.

06/03/13:

20:41 Changeset in orange [11582:12ecb82d93d7] by astaric
defaultPython2.6 compatibilty.
19:32 Changeset in orange [11581:efa8c37d8a02] by astaric
defaultAdded instructions for running tests to README.
19:05 Changeset in orange [11580:3c0351009340] by astaric
defaultEnabled running tests from setup.py.
18:01 Changeset in orange [11579:95d81ef5d944] by Miha Stajdohar <miha.stajdohar@…>
defaultAdded docs to TOC.
17:55 Changeset in orange [11578:33b9ee3dbf60] by Miha Stajdohar <miha.stajdohar@…>
defaultMerged.
17:54 Changeset in orange [11577:c829768edd0d] by Miha Stajdohar <miha.stajdohar@…>
defaultAdded C to Python docs.
14:59 Changeset in orange [11576:fb4551130eaf] by markotoplak
defaultAdded missing dicretizers to the Orange hierarchy.

06/02/13:

23:24 Changeset in orange [11575:c08f8de2cf30] by markotoplak
defaultOWPaintData: Fixed an undo bug.

05/31/13:

13:40 Changeset in orange [11574:320dadad4e54] by Ales Erjavec <ales.erjavec@…>
defaultMerge
13:39 Changeset in orange [11573:f92bad28c999] by Ales Erjavec <ales.erjavec@…>
defaultUpdate the table view after color selection.
13:38 Changeset in orange [11572:27c26e9d7be5] by Ales Erjavec <ales.erjavec@…>
defaultCleanup of TableBarItem class.
13:01 Changeset in orange [11571:661c03bcff02] by astaric <anze.staric@…>
defaultMerged in ragezor/orange (pull request #13) PainData widget improvements
12:47 Changeset in orange [11570:59257e2f79df] by Martin Frlin <martin.frlin@…>
defaultPEP 8 style fixes
11:19 Ticket #1310 (Remove uses of socket.setdefaulttimout) created by ales
On some versions of Python this can break multiprocessing module …

05/30/13:

15:49 Changeset in orange [11565:2ace650fc44a] by Ales Erjavec <ales.erjavec@…>
defaultRefactored 'ExampleTableModel.headerData' code into helper functions.
15:49 Changeset in orange [11564:eca0d7ea5719] by Ales Erjavec <ales.erjavec@…>
defaultOptimization of 'ExampleTableModel.data' method.

05/29/13:

19:21 Ticket #1305 (Test Learners should implement handleNewSignals) closed by ales
fixed: Fixed in 3ab2a33f1269
18:04 Ticket #1309 (Update Python and PyQt4 in the windows installer packages.) created by ales
The current installer for Orange for Python 2.6 contains an old version of …
16:35 Changeset in orange [11563:2eb1d8d58768] by Ales Erjavec <ales.erjavec@…>
defaultLet 'sys.excepthook' handle exceptions from widget.
16:35 Changeset in orange [11562:ec47c1ae6cc6] by Ales Erjavec <ales.erjavec@…>
defaultImproved exception checking for learner pre-test.
16:35 Changeset in orange [11561:3ab2a33f1269] by Ales Erjavec <ales.erjavec@…>
defaultCoalesce updates on input changes into a single update loop run. (by …
16:20 Changeset in orange [11560:b14abf103fda] by Jure Zbontar <jure.zbontar@…>
defaultAdd NN widget
16:19 Changeset in orange [11559:05d6847d3185] by Jure Zbontar <jure.zbontar@…>
defaultAdd normalize flag for NNs
15:35 Changeset in orange [11569:f4937d652281] by Martin Frlin <martin.frlin@…>
defaultRemoved prints that were there for debugging
15:24 Changeset in orange [11568:3b63e32b3599] by Martin Frlin <martin.frlin@…>
defaultUndo and redo is now functional
13:46 Changeset in orange [11558:e050e7ade4e4] by Jure Zbontar <jure.zbontar@…>
defaultFix PyQt version comparison bug
13:22 Changeset in orange-bioinformatics [1803:e8183616f755] by markotoplak
defaultobiGeneSetSig: slow implementation of LLR to test correctness
12:58 Changeset in orange-bioinformatics [1802:959e64f489d2] by markotoplak
defaultobiGeneSetSig: Prevent crashing of LLR if the standard deviation is zero.

05/28/13:

19:02 Changeset in orange [11567:53187432b22b] by Martin Frlin <martin.frlin@…>
defaultAdded undo and redo but it is still buggy at the moment.
16:33 Ticket #1308 (Widgets development documentation is obsolete) created by ales
The [ http://orange.biolab.si/docs/latest/extend-widgets/rst/basics/
15:58 Changeset in orange-bioinformatics [1801:bcc2ac03fb4f] by markotoplak
defaultobiGeneSetSig: data caches get reset at build_features instead of …
13:56 Changeset in orange-bioinformatics [1810:ad758982f7eb] by markotoplak
defaultRenamed inputs and outputs of gene set enrichment widget.
13:30 Changeset in orange-bioinformatics [1809:b543c10a4aad] by markotoplak
defaultGene set enrichment widget detects gene sets with taxid == None.
13:04 Changeset in orange-bioinformatics [1808:c80623c809a1] by markotoplak
defaultOWtest can now appear in canvas.
11:10 Changeset in orange [11557:2ac1b27290d5] by Ales Erjavec <ales.erjavec@…>
defaultChanged the "Get Started" action tooltip

05/27/13:

15:41 Changeset in orange [11556:c9ec072c64a1] by blaz <blaz.zupan@…>
defaultcorrected error with 25th data instance
15:02 Changeset in orange [11566:f6ea199ce29d] by Martin Frlin <martin.frlin@…>
defaultAdded selection deleting with delete key.
13:32 Changeset in orange [11555:57e8d3988f7f] by Ales Erjavec <ales.erjavec@…>
defaultSet version to 2.7.1
13:32 Changeset in orange [11554:f1effe004d85] by Ales Erjavec <ales.erjavec@…>
defaultAdded tag 2.7 for changeset 19b97395b702
13:28 Changeset in orange [11553:19b97395b702] by Ales Erjavec <ales.erjavec@…>
defaultSet release version 2.7
12:55 Changeset in orange [11552:21593bc25cb5] by Ales Erjavec <ales.erjavec@…>
defaultFix to MANIFEST.in Added missing documentation files, excluded …
11:13 Changeset in orange [11551:17ab2502d99f] by Ales Erjavec <ales.erjavec@…>
defaultRandom Forest widget documentation fix. Chosen tree output is no longer …

05/24/13:

16:15 Changeset in orange [11550:34029dacd329] by Ales Erjavec <ales.erjavec@…>
defaultIgnore/reject drops on the canvas with unsupported data.
16:01 Changeset in orange [11549:bcc2297e1491] by Ales Erjavec <ales.erjavec@…>
defaultChanged the initial widget 'Help' action enabled state. Should be …
15:21 Changeset in orange [11548:635226cda157] by Ales Erjavec <ales.erjavec@…>
defaultDo not overwrite saved geometry in closeEvent if the widget was already …
15:21 Changeset in orange [11547:43f424573564] by Ales Erjavec <ales.erjavec@…>
defaultAdded a window title to the Settings dialog.
14:38 Changeset in orange [11546:ab6eaa6b6e9c] by Ales Erjavec <ales.erjavec@…>
defaultFixed the ask save changes dialog text.
14:10 Changeset in orange-bioinformatics [1807:666d56b81a52] by Flashpoint <vid.flashpoint@…>
defaultThe OWtest.py prototype widget for custom gene sets now correctly imports …
12:56 Ticket #1307 (Modal dialogs do not have a close window button in GNOME 3) created by ales
This makes the Welcome Screen and Settings somewhat difficult to dismiss …

05/23/13:

17:35 Changeset in orange [11545:0281bd5902b0] by Ales Erjavec <ales.erjavec@…>
defaultRefactored scheme save methods. Added common error handing.
17:35 Changeset in orange [11544:989ba559a51d] by Ales Erjavec <ales.erjavec@…>
defaultAdded error checking in 'check_can_save'.
17:35 Changeset in orange [11543:2938d744f3cd] by Ales Erjavec <ales.erjavec@…>
defaultFixed user error messages formating.
16:17 Changeset in orange-bioinformatics [1806:728988337b94] by Flashpoint <vid.flashpoint@…>
defaultThe prototype widget for adding and removing custom gene sets
16:16 Changeset in orange-bioinformatics [1805:c2e4880abd58] by Flashpoint <vid.flashpoint@…>
defaultAdded functionality to obiGeneSets.py to remove locally stored gene sets. …
15:45 Changeset in orange [11542:817d044bd136] by astaric
defaultFixed an error in RSE and RRSE formulas.
15:24 Changeset in orange [11541:eb1ce4c866b6] by astaric
defaultFixed an error in RMSE and MSE formulas.
10:42 Changeset in orange-bioinformatics [1800:017fad842a3e] by markotoplak
defaultVersion bump.
10:39 Changeset in orange-bioinformatics [1799:2f952a765716] by markotoplak
defaultMerged changes from Vid's branch.

05/22/13:

19:18 Ticket #1306 (Fix global widget settings persistence) created by ales
They should NOT be saved in files named by their title (possible name …
19:07 Changeset in orange [11540:7a1e9c31d414] by Ales Erjavec <ales.erjavec@…>
defaultClose the widget before saving it's settings.
19:07 Changeset in orange [11539:2723d9b63fb0] by Ales Erjavec <ales.erjavec@…>
defaultSave widget geometry only if the widget was explicitly shown.
15:03 Changeset in orange [11538:1c55aef55d7f] by Ales Erjavec <ales.erjavec@…>
defaultImplemented size hint caching for MenuPage widget.
11:42 Ticket #1289 (Loosing recent files) closed by ales
worksforme
11:40 Changeset in orange [11537:5765e72b664e] by Ales Erjavec <ales.erjavec@…>
defaultAdded tutorial '.ows' files to package_data and 'MANIFEST.in'.
11:13 Ticket #1304 (orange-canvas fails) closed by ales
worksforme: Check that you have the appropriate version of Orange on sys.path. Note …
10:58 Ticket #1305 (Test Learners should implement handleNewSignals) created by ales
i.e. setting a dataset and a learner in the same update front enters the …

05/21/13:

16:59 Changeset in orange [11536:0029490bab9b] by Ales Erjavec <ales.erjavec@…>
defaultWorkaround for a broken layout with OSX unified title bar.
15:01 Changeset in orange-bioinformatics [1786:df95834ddac7] by markotoplak
defaultobiGeneSetSig: SPCA with threshold selection by permutation.
13:45 Changeset in orange-bioinformatics [1785:b3a53ba8ada0] by markotoplak
defaultobiGeneSetSig: added SPCA.
13:14 Changeset in orange [11535:6805b5990d25] by Ales Erjavec <ales.erjavec@…>
defaultPass the full executable path and positional filename arguments to …
13:01 Changeset in orange-bioinformatics [1798:f1e73901a1d3] by Flashpoint <vid.flashpoint@…>
defaultAdded Reactome Pathways genesets for humans
09:44 Changeset in orange-bioinformatics [1797:43f9097a0bc8] by Flashpoint <vid.flashpoint@…>
defaultobiOMIM.py is now correctly updated
09:30 Changeset in orange-bioinformatics [1796:a8618bd60eb7] by Flashpoint <vid.flashpoint@…>
defaultMerged obiOMIM.py latest commit

05/20/13:

13:00 Changeset in orange-bioinformatics [1784:6a26e5172130] by markotoplak
defaultOMIM: uses server files version by default.
12:00 Changeset in orange [11534:ec08dd947eae] by Ales Erjavec <ales.erjavec@…>
defaultDisabled .msi installer package building.
10:24 Changeset in orange-bioinformatics [1795:663192bd4469] by Flashpoint <vid.flashpoint@…>
defaultRemoved obiCytobands.py and created genesets in obiGeneSets.py. …
09:17 Changeset in orange-bioinformatics [1794:3a530b619d7f] by Flashpoint <vid.flashpoint@…>
defaultAdded Cytobands genesets and modified obiOMIM.py. Both need some extra …

05/17/13:

20:27 Changeset in orange [11533:a0eb042207e8] by Ales Erjavec <ales.erjavec@…>
defaultChanged Orange Canvas startup scripts to launch the new interface.
20:27 Changeset in orange [11532:68ae91b09f62] by Ales Erjavec <ales.erjavec@…>
defaultSet the application version from the package info and display it in the …
20:26 Changeset in orange [11531:d6a84c97fd46] by Ales Erjavec <ales.erjavec@…>
defaultSet version to 2.7rc1
19:10 Changeset in orange [11530:aa0ff72380bb] by Ales Erjavec <ales.erjavec@…>
defaultAdded tag 2.6.1 for changeset 8adaabe1a15b
18:36 Changeset in orange [11529:8adaabe1a15b] by Ales Erjavec <ales.erjavec@…>
defaultMark version 2.6.1 for release.
17:56 Changeset in orange [11528:afc4dba85d81] by Ales Erjavec <ales.erjavec@…>
defaultSmall fixes to OSX application bundle build scripts.
13:56 Changeset in orange [11527:c12e64d1b72b] by Ales Erjavec <ales.erjavec@…>
defaultLimit the number of recent schemes shown.
13:48 Changeset in orange [11526:5d54a8455087] by markotoplak
defaultquickmenu: added border on the right of category buttons
12:46 Changeset in orange [11525:a6619bfdc8e4] by markotoplak
defaultMade menu tooltips "lighter" (like those on canvas).

05/16/13:

13:20 Changeset in orange [11524:73f80557851f] by Ales Erjavec <ales.erjavec@…>
defaultFix for a possible segfault while filtering the items in a menu.
11:44 Changeset in orange [11523:8a3d9995ccd7] by Ales Erjavec <ales.erjavec@…>
defaultSelection follows mouse cursor in MenuPage widget.

05/15/13:

16:58 Changeset in orange [11522:425d83b20b96] by Ales Erjavec <ales.erjavec@…>
defaultHandle QFileOpenEvent request events.
10:53 Changeset in orange [11521:8334987a58f3] by Ales Erjavec <ales.erjavec@…>
defaultRemoved "Widget Categories" settings tab.

05/14/13:

16:28 Changeset in orange [11520:9562da789a35] by Ales Erjavec <ales.erjavec@…>
defaultOverride setPixmap, ... methods on all versions of Qt.
14:00 Changeset in orange-bioinformatics [1793:5dfeaff02331] by Flashpoint <vid.flashpoint@…>
defaultP-values greater than 0.001 are now displayed with regular notation in the …
13:46 Changeset in orange [11519:ef52206b2845] by Ales Erjavec <ales.erjavec@…>
defaultSlight quick menu style fix.
13:33 Changeset in orange-bioinformatics [1792:89d57e897273] by Flashpoint <vid.flashpoint@…>
defaultAdded a documentation entry for obiDictyMutants.py
11:31 Changeset in orange-bioinformatics [1791:8e343fc769be] by Flashpoint <vid.flashpoint@…>
defaultSorting according to p-values works.
09:40 Changeset in orange-bioinformatics [1790:b02dd1e12b3f] by markotoplak
defaultAdded obiDictyMutants to the documentation index.

05/13/13:

17:56 Changeset in orange [11518:25344bdd7781] by Ales Erjavec <ales.erjavec@…>
defaultChanged the main window default size.
17:14 Changeset in orange [11517:c5ca7e562287] by Ales Erjavec <ales.erjavec@…>
defaultFixed progressBarValue property setter. Use the OWBaseWidget unbounded …
15:05 Changeset in orange [11516:8ea3fb26ee98] by Ales Erjavec <ales.erjavec@…>
defaultUse absolute screen geometry to position the popup.
14:52 Changeset in orange-bioinformatics [1789:4c7a09867397] by Marko Toplak <marko.toplak@…>
defaultMerged biolab/orange-bioinformatics into default
14:47 Changeset in orange-bioinformatics [1788:ef6b29387bb1] by Flashpoint <vid.flashpoint@…>
defaultDeleted redundant files on the Orange server
14:42 Changeset in orange-bioinformatics [1787:8caf4af2d6bb] by Flashpoint <vid.flashpoint@…>
defaultDeleted redundant files on the Orange server
14:37 Changeset in orange [11515:e8ed1b921a5e] by markotoplak
defaultFile -> Show Properties renamed to Scheme Info.
14:27 Changeset in orange [11514:78a58779f084] by markotoplak
defaultDatabases update: ignore domains that do not exist on the server.
14:19 Changeset in orange [11513:e7bfa08461c4] by markotoplak
defaultDatabases update: use a dummy date instead of crashing.
14:04 Changeset in orange [11512:4aade1f630e1] by Ales Erjavec <ales.erjavec@…>
defaultChanged "Don't show at ..." check box text to "Show at ...".
13:57 Changeset in orange [11511:67ec82ceee26] by Ales Erjavec <ales.erjavec@…>
defaultFixed intialization of toolbox exclusive property.
13:49 Changeset in orange-bioinformatics [1783:4a72eace4f4c] by markotoplak
defaultRegister already calls update_server_list internally.
11:34 Changeset in orange [11510:dc1af66e0839] by Ales Erjavec <ales.erjavec@…>
defaultChanged default settings/initialization.
11:34 Changeset in orange [11509:80bfa2c2b257] by Ales Erjavec <ales.erjavec@…>
defaultRemoved menu role for add-on action.
11:33 Changeset in orange [11508:5f54d6c68d9e] by Ales Erjavec <ales.erjavec@…>
defaultMoved gradient functions into gui.utils.
10:19 Changeset in orange [11507:4b7fba2a56bc] by Ales Erjavec <ales.erjavec@…>
defaultClear current/selected items before showing the menu.

05/12/13:

18:26 Changeset in orange-bioinformatics [1782:e6ed6e7bced3] by Flashpoint <vid.flashpoint@…>
defaultAdded Phenotypes to DictyMutants hierarchy

05/11/13:

09:46 Ticket #1304 (orange-canvas fails) created by blaz
In README.txt it says: […] but starting orange with this command gives …

05/10/13:

15:26 Changeset in orange [11506:31e40306cb73] by Ales Erjavec <ales.erjavec@…>
defaultAdded a linear gradient to the category buttons in the toolbar.
15:19 Changeset in orange [11505:41b983344153] by Ales Erjavec <ales.erjavec@…>
defaultFixed 'Databases Update' widget progress bar initialization.
15:19 Changeset in orange-bioinformatics [1781:764dc2b10839] by Flashpoint <vid.flashpoint@…>
defaultFirst attempt at configuring Orange server update
14:33 Changeset in orange [11504:131dec28c5e1] by markotoplak
defaultquickmenu sloppy regions get updated with mouse moves on the same icon, …
12:27 Changeset in orange [11503:04bd629abd3d] by Ales Erjavec <ales.erjavec@…>
defaultMerge
12:23 Changeset in orange [11497:8bf64455aa84] by markotoplak
defaultAdded server files to the documentation index.
11:59 Changeset in orange [11502:66682f793dbd] by Ales Erjavec <ales.erjavec@…>
defaultFixed placement of popup category menu widgets. They now popup to the …
11:58 Changeset in orange [11501:dd44b3a10e49] by Ales Erjavec <ales.erjavec@…>
defaultChanged MenuPage size hint computation. No longer uses the default …
10:46 Changeset in orange-bioinformatics [1780:5cc362d703bb] by Flashpoint <vid.flashpoint@…>
defaultDictyMutants geneset working
10:45 Changeset in orange-bioinformatics [1779:736a0fc7fccf] by Flashpoint <vid.flashpoint@…>
defaultMerged biolab/orange-bioinformatics into default

05/09/13:

18:01 Changeset in orange [11500:467840f078f7] by Ales Erjavec <ales.erjavec@…>
defaultSmall style fixes.
15:52 Changeset in orange [11499:677ba655a133] by Ales Erjavec <ales.erjavec@…>
defaultFixed new current menu selection on a timeout.
15:30 Changeset in orange [11498:373539640304] by Ales Erjavec <ales.erjavec@…>
defaultImplemented 'sloppy submenus' like handling of hover tab changes.
11:20 Changeset in orange [11496:28c3d24e59ec] by Ales Erjavec <ales.erjavec@…>
defaultMerge

05/08/13:

20:06 Changeset in orange [11495:12e60f527869] by Ales Erjavec <ales.erjavec@…>
defaultAdded a popup menu class with widgets displayed in a list.
19:59 Changeset in orange [11494:a7627a146d43] by Ales Erjavec <ales.erjavec@…>
defaultMoved the size hint computation for the 'MenuPage'.
19:58 Changeset in orange [11493:1afbda175fac] by Ales Erjavec <ales.erjavec@…>
defaultActivate an item on a click (an not just a press).
16:45 Changeset in orange-bioinformatics [1775:023037d1e29a] by markotoplak
defaultobiGeneSetSig: LLR uses combined standard deviation if a standard …
Note: See TracTimeline for information about the timeline view.