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03/31/13 19:08:36 (
Possible mentors: Marko
=== Bioinformatics add-on ===
Bioinformatics add-on extends Orange both in scripting and with a set of widgets. The aim of the add-on is for biologists to easily explore various data sources and used them for integrative data mining. Present functionality includes gene set enrichment (GO, KEGG, NCBI's MeSH), gene selection, visualization of heatmaps and access to various specialized data bases (GEO, BioMart, Atlas, NCBI Gene). The library requires an update, development of unit tests for scripts, documentation for widgets, and addition of new data sources, first in scripts then in widgets.
Useful skills: Python, some knowledge on bioinformatics and related public data bases
Level from 1 (beginner) to 5 (professional): 4.
Possible mentors: Blaz